FC930079

Overview
NameFC930079
Unique NameFC930079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX1_MACFU (Glutathione peroxidase 1 OS=Macaca fuscata fuscata GN=GPX1 PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 57/160 (35.62%), Postives = 80/160 (50.00%), Query Frame = 3
Query:  285 AAT*KSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLV 689
            AA  +S+Y F+ + +  G+ V L   +GKVLLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI       R    F+  F +F+K +VNG    P++ FL+ +      D                    V WNFEKFLV
Sbjct:    8 AAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLIAWSPVCRNDVAWNFEKFLV 167          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX1_HUMAN (Glutathione peroxidase 1 OS=Homo sapiens GN=GPX1 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 57/160 (35.62%), Postives = 80/160 (50.00%), Query Frame = 3
Query:  285 AAT*KSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLV 689
            AA  +S+Y F+ + +  G+ V L   +GKVLLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI       R    F+  F +F+K +VNG    P++ FL+ +      D                    V WNFEKFLV
Sbjct:    8 AAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLV 167          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX1_HYLLA (Glutathione peroxidase 1 OS=Hylobates lar GN=GPX1 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17
Identity = 56/160 (35.00%), Postives = 80/160 (50.00%), Query Frame = 3
Query:  285 AAT*KSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLV 689
            AA  +S+Y F+ + + G + V L   +GK+LLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI       R    F+  F +F+K +VNG    P++ FL+ +      D                    V WNFEKFLV
Sbjct:    8 AAAAQSVYAFSARPLTGGEPVSLGSLRGKILLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLV 167          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX1_BOVIN (Glutathione peroxidase 1 OS=Bos taurus GN=GPX1 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16
Identity = 57/162 (35.19%), Postives = 82/162 (50.62%), Query Frame = 3
Query:  285 AAT*KSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQFLK-------SSAGGFLGDL------------VKWNFEKFLV 689
            AA  +++Y F+ + +  G+   LS  +GKVLLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI    C +       F+  F +F+K +VNG    P++ FL+         A   + D             V WNFEKFLV
Sbjct:   13 AAAPRTVYAFSARPLAGGEPFNLSSLRGKVLLIENVASLUGTTVRDYTQMNDLQRRLGPRGLVVLGFPCNQFGHQENAKNEEI--LNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLREVLPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLV 172          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX5_CANFA (Epididymal secretory glutathione peroxidase OS=Canis familiaris GN=GPX5 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.418e-16
Identity = 57/151 (37.75%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  300 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI----KEFACTR-FKAEFPIFDKVDVNGPNTAPVYQFLKSSA---GGFLGDL------------VKWNFEKFLV 689
            ++Y++    ++G + +   ++  K +L VNVA+ CGLT + Y EL+ L E+ K  G  +L FPCNQFG Q PG N EI    K     R +   F +F+K DVNG     V+ FLK S       LG              ++WNFEKFLV
Sbjct:   39 TIYEYEALTLNGNERIQFKQYPRKHVLFVNVATYCGLT-AQYPELNSLQEELKPLGLVVLGFPCNQFGKQGPGENSEILPGLKYVRPGRGYVPNFQLFEKGDVNGEKEQKVFTFLKLSCPHPSEVLGSFRHISWDPVKVHDIRWNFEKFLV 188          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPXC_BRUPA (Cuticular glutathione peroxidase OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.159e-16
Identity = 56/157 (35.67%), Postives = 78/157 (49.68%), Query Frame = 3
Query:  291 T*KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-------IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVK---------------WNFEKFLVDK 695
            T +++YDF V+ ++G    L++++ KVLLIVNVA+ C  T   Y + + + E        IL FPCNQF  QEP  N E       ++            IF K++VNG N  P+Y+FLK      +  + K               WNFEKFLVDK
Sbjct:   38 TNQTVYDFQVQMLNGAQKSLAEYRNKVLLIVNVATYCAYT-MQYRDFNPILESNSNGTLNILGFPCNQFYLQEPAENHELLSGLKYVRPGHGWEPHKNMHIFGKLEVNGENDHPLYKFLKERCPPTVPVIGKRHQLIYDPIGTNDVIWNFEKFLVDK 193          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPXC_BRUMA (Cuticular glutathione peroxidase OS=Brugia malayi PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.159e-16
Identity = 56/157 (35.67%), Postives = 78/157 (49.68%), Query Frame = 3
Query:  291 T*KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-------IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVK---------------WNFEKFLVDK 695
            T +++YDF V+ ++G    L++++ KVLLIVNVA+ C  T   Y + + + E        IL FPCNQF  QEP  N E       ++            IF K++VNG N  P+Y+FLK      +  + K               WNFEKFLVDK
Sbjct:   38 TNQTVYDFQVQMLNGAQKSLAEYRNKVLLIVNVATYCAYT-MQYRDFNPILESNSNGTLNILGFPCNQFYLQEPAENHELLSGLKYVRPGHGWEPHKNMHIFGKLEVNGENDHPLYKFLKERCPPTVPVIGKRHQLIYDPIGTNDVIWNFEKFLVDK 193          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX1_PANTR (Glutathione peroxidase 1 OS=Pan troglodytes GN=GPX1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.159e-16
Identity = 56/160 (35.00%), Postives = 79/160 (49.38%), Query Frame = 3
Query:  285 AAT*KSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLV 689
            AA  +S+Y F+ + +  G+ V L   +GKVLLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI       R    F+  F +F+K +VNG     ++ FL+ +      D                    V WNFEKFLV
Sbjct:    8 AAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHTLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLV 167          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX1_RABIT (Glutathione peroxidase 1 OS=Oryctolagus cuniculus GN=GPX1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.388e-16
Identity = 56/160 (35.00%), Postives = 79/160 (49.38%), Query Frame = 3
Query:  285 AAT*KSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLV 689
            AA  +S+Y F+   +  G+ V L   +GKVLLI NVAS  G T  +Y++++ L E+   +   +L FPCNQFG QE   N EI       R    F+  F +F K +VNG   +P++ FL+ +      D                    V W+FEKFLV
Sbjct:    7 AAAAQSVYSFSAHPLAGGEPVNLGSLRGKVLLIENVASLUGTTVRDYTQMNELQERLGPRALVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFQKCEVNGAKASPLFAFLREALPPPSDDPTALMTDPKFITWCPVCRNDVSWSFEKFLV 166          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX2_RAT (Glutathione peroxidase 2 OS=Rattus norvegicus GN=Gpx2 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.568e-15
Identity = 54/155 (34.84%), Postives = 75/155 (48.39%), Query Frame = 3
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLV 689
            KS YD +   +DG+ +  + F+G+ +LI NVAS  G T  +Y++L+ L  ++  +   +L FPCNQFG QE   N EI       R    F+  F +  K DVNG N  PV+ +LK        D                    V WNFEKFL+
Sbjct:    6 KSFYDLSAIGLDGEKIDFNTFRGRAVLIENVASLUGTTTRDYTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRHGGGFQPTFSLTQKCDVNGQNQHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLI 159          
The following BLAST results are available for this feature:
BLAST of FC930079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX1_MACFU3.731e-1735.63Glutathione peroxidase 1 OS=Macaca fuscata fuscata... [more]
GPX1_HUMAN3.731e-1735.63Glutathione peroxidase 1 OS=Homo sapiens GN=GPX1 P... [more]
GPX1_HYLLA4.873e-1735.00Glutathione peroxidase 1 OS=Hylobates lar GN=GPX1 ... [more]
GPX1_BOVIN1.086e-1635.19Glutathione peroxidase 1 OS=Bos taurus GN=GPX1 PE=... [more]
GPX5_CANFA1.418e-1637.75Epididymal secretory glutathione peroxidase OS=Can... [more]
GPXC_BRUPA3.159e-1635.67Cuticular glutathione peroxidase OS=Brugia pahangi... [more]
GPXC_BRUMA3.159e-1635.67Cuticular glutathione peroxidase OS=Brugia malayi ... [more]
GPX1_PANTR3.159e-1635.00Glutathione peroxidase 1 OS=Pan troglodytes GN=GPX... [more]
GPX1_RABIT5.388e-1635.00Glutathione peroxidase 1 OS=Oryctolagus cuniculus ... [more]
GPX2_RAT1.568e-1534.84Glutathione peroxidase 2 OS=Rattus norvegicus GN=G... [more]

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Properties
Property NameValue
Genbank descriptionC34003E10EF PostHarvC1 Citrus clementina cDNA clone C34003E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930079 ID=FC930079; Name=FC930079; organism=Citrus clementina; type=EST; length=726bp
GCTCTGTTANACAACGATTGATTCACTTAAATTCCATCTCAATGGCTTCT
TATTCGATGCCTTTCTCTGCAGCTTTCTCCTCACCTTTACGGCATTTCAC
ACAAATCAAAACATGCCCTGCTGCATGGGCTTCATCAATGGCGGCTTCAT
GGACTCCTACTAATTCAATCAAATCATCAATTGGGTCCGCTAAACCAGGC
TTTCTTCAACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTT
CGTGAAACGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTTAGAAGT
CTTTATATGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCCTCTT
AGCAAGTTTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATG
TGGCTTGACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAGAAGT
ACAAGACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGT
GGGCAAGAGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTACTAG
GTTTAAGGCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGACCAA
ACACAGCTCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATTTTTA
GGCGACCTTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAATGGT
AAGTCATCGAGAGATATCCACCACTA
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