FC930080

Overview
NameFC930080
Unique NameFC930080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930080 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 4.504e-31
Identity = 87/217 (40.09%), Postives = 122/217 (56.22%), Query Frame = 1
Query:   67 VSNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQIL-IKIQHTD-VPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALK 711
            V  K   L  +  GFP +S+ ++ +     ++   +   VLL+ L+LS DPYMR    KL           G+ + G  VA+V++S +  +    +V    GW  +S+     +  +  +  D +PLS   G +GMPG+TAY GL ++C  K GE V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD AFNYK    L+ AL+
Sbjct:    2 VQAKTWTLKKHFEGFPTDSNFELRT----TELPPLNNGEVLLEALFLSVDPYMRVAAKKLKE---------GDSMMGEQVARVVESKNSAFPTGTIVVALLGWTSHSISDGNGLRKLPAEWPDKLPLSLALGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALR 204          
BLAST of FC930080 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.504e-31
Identity = 90/219 (41.10%), Postives = 121/219 (55.25%), Query Frame = 1
Query:   67 VSNKRVILSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQI--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKR 714
            V  K   L  +  G P +SD ++ +  +  LK  E     VLL+ L+LS DPYMR    +L           G  + G  VA+V++S +  +    +V   +GW  + +     +  L+      +PLS   G +GMPG+TAY GL EVC  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EK+  LK + GFD AFNYK    L+ ALK+
Sbjct:    2 VKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGE-----VLLEALFLSVDPYMRIASKRLKE---------GAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNYKTVNSLEEALKK 205          
BLAST of FC930080 vs. ExPASy Swiss-Prot
Match: PTGR2_BOVIN (Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.188e-23
Identity = 75/221 (33.94%), Postives = 115/221 (52.04%), Query Frame = 1
Query:   76 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKI--QHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRC 717
            +RV+L++     G P   + ++   ++   V EG    V ++ LYLS DPYMR RM++     ++  +   + ++G GV  + +S H N+ K D V  F    +  ++    IL K+  Q  D  LSY+ G +GMPG+T+  G+ E    +    + + VS A+GA G L GQ  +L GC  VVG  G+ EK   L ++ GFD A NYKE    +   K C
Sbjct:    4 QRVVLNSRPGKNGHPVAENFRVEEVNLPDCVNEGQ---VQVRTLYLSVDPYMRCRMNEDTGSDYITPWQLSQVVDGGGVGIIEESKHTNFMKGDFVTSFYWPWQTKVILDGNILEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHITAGSNQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGTPEKCLFLTSELGFDAAINYKEGNVAEQLHKLC 221          
BLAST of FC930080 vs. ExPASy Swiss-Prot
Match: PTGR2_PONAB (Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.452e-21
Identity = 70/221 (31.67%), Postives = 113/221 (51.13%), Query Frame = 1
Query:   76 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKI--QHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRC 717
            +RV+L++     G P   + ++    +   + EG    V ++ LYLS DPYMR RM++     ++  +   + ++G G+  + +S H N  K D V  F    +  ++     L K+  Q  D  LSY+ G +GMPG+T+  G+ E    +    + + VS A+GA G + GQ   L GC  VVG  G+ EK  LL ++ GFD A NYK++   +   + C
Sbjct:    4 QRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQ---VQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHLLGCSRVVGICGTHEKCVLLTSELGFDAAINYKKDNVAEQLRESC 221          
BLAST of FC930080 vs. ExPASy Swiss-Prot
Match: PTGR2_HUMAN (Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21
Identity = 69/221 (31.22%), Postives = 112/221 (50.68%), Query Frame = 1
Query:   76 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKI--QHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRC 717
            +RV+L++     G P   + ++    +   + EG    V ++ LYLS DPYMR RM++     ++  +   + ++G G+  + +S H N  K D V  F    +  ++     L K+  Q  D  LSY+ G +GMPG+T+  G+ E    +    + + VS A+GA G + GQ     GC  VVG  G+ EK  LL ++ GFD A NYK++   +   + C
Sbjct:    4 QRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQ---VQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESC 221          
BLAST of FC930080 vs. ExPASy Swiss-Prot
Match: PTGR2_RAT (Prostaglandin reductase 2 OS=Rattus norvegicus GN=Ptgr2 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.577e-20
Identity = 69/209 (33.01%), Postives = 107/209 (51.20%), Query Frame = 1
Query:   76 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGF-TGWEEYSLVTAPQI-LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNKFGFDDAFNYK 681
            +RV+L +     G P   + ++   S+   + EG    V ++ LYLS DPYMR +M++     ++  +   +  +G G+  + +S H   AK D V  F   W+  +++    +  +  Q  D  LSY+ G +GMPG+T+  G+ E    S    + + VS A+GA G L GQ   L GC  VVG  G+ EK   L ++ GFD A NYK
Sbjct:    4 QRVVLDSRPGKNGNPVAENFRVEEVSLPDTINEGQ---VRVRTLYLSVDPYMRCKMNEETGADYLAPWQLAQVADGGGLGVIEESKHQKLAKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHVSAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTHEKCLFLTSELGFDAAVNYK 209          
BLAST of FC930080 vs. ExPASy Swiss-Prot
Match: PTGR2_MOUSE (Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.672e-20
Identity = 69/209 (33.01%), Postives = 108/209 (51.67%), Query Frame = 1
Query:   76 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGF-TGWEEYSLVTAPQI-LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNKFGFDDAFNYK 681
            +RV+L++     G P   + ++   S+   + EG    V ++ LYLS DPYMR +M++     ++  +   +  +G G+  V +S H    K D V  F   W+  +++    +  +  Q  D  LSY+ G +GMPG+T+  G+ E    S    + + VS A+GA G L GQ   L GC  VVG  G++EK   L ++ GFD A NYK
Sbjct:    4 QRVVLNSRPGKNGNPVAENFRVEEFSLPDALNEGQ---VQVRTLYLSVDPYMRCKMNEDTGTDYLAPWQLAQVADGGGIGVVEESKHQKLTKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYK 209          
The following BLAST results are available for this feature:
BLAST of FC930080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PTGR1_RAT4.504e-3140.09Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]
PTGR1_CAVPO4.504e-3141.10Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]
PTGR2_BOVIN1.188e-2333.94Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 P... [more]
PTGR2_PONAB1.452e-2131.67Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2... [more]
PTGR2_HUMAN4.226e-2131.22Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2... [more]
PTGR2_RAT3.577e-2033.01Prostaglandin reductase 2 OS=Rattus norvegicus GN=... [more]
PTGR2_MOUSE4.672e-2033.01Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2... [more]

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Properties
Property NameValue
Genbank descriptionC34003E11EF PostHarvC1 Citrus clementina cDNA clone C34003E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930080 ID=FC930080; Name=FC930080; organism=Citrus clementina; type=EST; length=720bp
GAAACAATTCTGATTTTCCTGCCAGAGAAAAAAAACTGAGAAACAATGGC
GGCTGAACAAGAAGCTGTGAGCAATAAGCGGGTGATTCTGAGCAACTATG
TGACAGGTTTTCCAAAAGAATCAGACATGAAGATAACAAGTGGATCAATA
AAGCTGAAGGTAGCAGAGGGTTCAAAAGACACAGTGCTTTTGAAGAATCT
TTATCTTTCTTGTGATCCTTACATGCGATGGCGTATGAGCAAGCTTGATA
GACCTTCTTTTGTTGATTCATTCCATCCTGGTGAGCCTATAAATGGTTAT
GGGGTAGCTAAAGTTTTGGATTCTACACATCCAAATTATGCAAAAGATGA
CTTGGTTTGGGGCTTTACCGGGTGGGAGGAGTACAGTCTCGTTACAGCCC
CACAGATTTTGATTAAAATTCAGCATACAGATGTGCCCCTTTCATACTAT
ACTGGAATCCTTGGTATGCCTGGTGTGACCGCATACGCTGGTTTATACGA
AGTTTGCTCTCCGAAGAAAGGTGAGTATGTCTATGTATCTGCAGCATCTG
GAGCTGTTGGTCAGCTTGTTGGCCAATTTGCAAAATTGGCTGGTTGCTAT
GTTGTTGGAAGTGCTGGAAGCAAAGAAAAGGTCGATTTGTTGAAGAACAA
GTTTGGATTTGATGATGCTTTTAACTACAAGGAAGAGCCAGACTTGGATG
CAGCACTCAAAAGATGCTTC
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