FC930081

Overview
NameFC930081
Unique NameFC930081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930081 vs. ExPASy Swiss-Prot
Match: KATG_CHRSD (Catalase-peroxidase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=katG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 69/247 (27.94%), Postives = 101/247 (40.89%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTG--------GPDIPFHPGRD-----------------------DKAEPP----QEGRL----------PDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH---------------------------KER--------SGFEGPWTRNPLIFDNSYFTELLTGE 668
            +  R+AWHSAG+Y +   + GG  G  R A   +   N   D   RLL P K+++   IS+ADL  L+G +  EV G        G +  +HP +D                       D  E P    Q G +          PD ++  + +R+ F A+M ++D++  AL +GGHT+G+CH                           K R        SG EG WT+NP  +D  +F  L   E
Sbjct:   85 MFARVAWHSAGSYRLADGRGGGGTGNQRFAPLNSWPDNVNTDKGRRLLWPIKKKYGNKISWADLMVLSGTIAYEVAGLKTYGFAFGREDIWHPEKDIYWGDEKEWLAPSDERYADVEKPDTMENPLAAVQMGLIYVNPEGVNGQPDPQKTAEQVRETF-ARMAMNDEETAALTAGGHTIGKCHGNGEAENLSAEPEAADVEYQGIGWMNTKGRGIGRDTVVSGIEGAWTKNPTQWDMGWFDMLFNHE 330          
BLAST of FC930081 vs. ExPASy Swiss-Prot
Match: PEM4_PHACH (Manganese peroxidase H4 OS=Phanerochaete chrysosporium PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 49/146 (33.56%), Postives = 69/146 (47.26%), Query Frame = 3
Query:  234 GGPFGTMRL--AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGV-EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFE-GPWTRNPLIFDNSYFTELL 659
            GG  G+M      E   SAN+G+D +V  L PF ++  TIS ADL Q AG V +    G P + F  GR +   P  EG +P+ +     + Q F      S  ++V+L   HT+ R  K     +  P+   P  FD   F E+L
Sbjct:   85 GGADGSMLHFPTIEPNFSANSGIDDSVNNLLPFMQKHDTISAADLVQFAGAVALSNCPGAPRLEFMAGRPNTTIPAVEGLIPEPQDSVTKILQRFEDAGNFSPFEVVSLLASHTVARADKVDETIDAAPFDSTPFTFDTQVFLEVL 230          
BLAST of FC930081 vs. ExPASy Swiss-Prot
Match: KATG_STRRE (Catalase-peroxidase OS=Streptomyces reticuli GN=katG PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 63/181 (34.81%), Postives = 81/181 (44.75%), Query Frame = 3
Query:  165 NCAPLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP-------PQEGRLPDAK-QGNDHLRQVFGA-QMGL------------------------------SDKDIVAL-SGGHTLGRCH 581
            N  PLM+R+AWHSAGTY +    GG   G  R A   +   N  LD A RLL P K+++  +IS+ADL  L G V +E  G     F  GR D  E        P+   L D +  G+  L    GA QMGL                              +D++ VAL +GGHT G+ H
Sbjct:   98 NYGPLMIRMAWHSAGTYRISDGRGGAGAGQQRFAPLNSWPDNGNLDKARRLLWPVKKKYGQSISWADLLILTGNVALETMGFKTFGFGGGRADVWEAEEDVYWGPETTWLDDRRYTGDRELENPLGAVQMGLIYVNPEGPNGNPDPIAAARDIRETFRRMAMNDEETVALIAGGHTFGKTH 278          
BLAST of FC930081 vs. ExPASy Swiss-Prot
Match: KATG_CAUCR (Catalase-peroxidase OS=Caulobacter crescentus GN=katG PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 58/177 (32.77%), Postives = 81/177 (45.76%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP------PQEGRL--------------------------PDAKQGND-------HLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 581
            L +R+AWH+AGTY +    GG   G  R A   +   N  LD A RLL P K+++   +S+ADLY L G V +E  G     F  GR D+ EP      P+   L                          P+   GN         +R+ F A+M ++D++ VAL +GGHT G+ H
Sbjct:   89 LFIRLAWHAAGTYRITDGRGGAGGGQQRFAPLNSWPDNTNLDKARRLLWPIKQKYGAKLSWADLYVLVGNVALESMGFKTFGFAGGRADQWEPEELYWGPESTWLDDKRYSGERELDSPLGAVQMGLIYVNPEGPNGNPDPLASARDIRETF-ARMAMNDEETVALIAGGHTFGKAH 264          
BLAST of FC930081 vs. ExPASy Swiss-Prot
Match: KATG_SOLUE (Catalase-peroxidase OS=Solibacter usitatus (strain Ellin6076) GN=katG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 63/176 (35.80%), Postives = 80/176 (45.45%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP------PQEGRLPDAK-QGNDHLRQVFGA-QMGL------------------------------SDKDIVAL-SGGHTLGRCH 581
            LM+R+AWHSAGTY +    GG   G  R A   +   N  LD A RLL P K+++   IS+ADL  LAG V +E  G     F  GR D  EP      P+   L D +  G   L +  GA QMGL                              +D++ VAL +GGHT G+ H
Sbjct:   99 LMIRMAWHSAGTYRITDGRGGAGAGQQRFAPLNSWPDNANLDKARRLLWPVKQKYGDKISWADLMVLAGNVALESMGFKTFGFAGGRSDVWEPEELYWGPEGTWLGDERYSGERQLSEPLGAVQMGLIYVNPEGPNGNPDPVAAAKDIRETFFRMAMNDEETVALIAGGHTFGKTH 274          
BLAST of FC930081 vs. ExPASy Swiss-Prot
Match: KATG3_MYCS2 (Catalase-peroxidase 3 OS=Mycobacterium smegmatis GN=katG3 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 71/257 (27.63%), Postives = 97/257 (37.74%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDK---------------------------------------AEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH------------------------------------KERSGFEGPWTRNPLIFDNSYFTELLTGEKDGLLHCHPTSPSG 710
            PL+LR+AWH AGTY +    GG   G +R A   +   N  LD A RLL P K+++   IS++DL   AG   +E  G     F  GR+D                                         +P     LPD       +R+ F  +MG++D++ VAL +GGHT G+ H                                       SG +G WT  P  +D S+ T L   E D  L     SP+G
Sbjct:   99 PLVLRMAWHFAGTYRIGDGRGGAGAGMLRFAPLNSFPDNRNLDKARRLLWPVKKKYGRKISWSDLMIFAGNRALESMGCRTFGFAGGREDAWEADETYWGPESTWLADERHSGVRDLDQPLAASEMGLIYVDPQGPATLPDPLASARDIRETF-RRMGMNDEETVALIAGGHTFGKSHGPTDPSRCLGPEPEGAPLEALGLGWVNSFGTGNGADTVTSGLDGIWTATPTKWDMSFLTTLFAYEWDVAL-----SPAG 349          
BLAST of FC930081 vs. ExPASy Swiss-Prot
Match: KATG_RHOP5 (Catalase-peroxidase OS=Rhodopseudomonas palustris (strain BisA53) GN=katG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.269e-11
Identity = 61/176 (34.66%), Postives = 80/176 (45.45%), Query Frame = 3
Query:  177 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP------PQEGRLPDAK-QGNDHLRQVFGA-QMGL------------------------------SDKDIVAL-SGGHTLGRCH 581
            L +R+AWHSAGTY +    GG   G  R A   +   N  LD A RLL P K+++   IS+ADL+ L+G V +E  G     F  GR D  EP      P+   L D++  G   L    GA QMGL                              +D++ VAL +GGHT G+ H
Sbjct:   90 LFIRLAWHSAGTYRISDGRGGAGAGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGNKISWADLFVLSGNVALESMGFKTFGFAGGRADTWEPEELYWGPEGTWLGDSRYSGERELSDPLGAVQMGLIYVNPEGPNGNPDPVGSAKDIRETFYRMAMNDEETVALIAGGHTFGKTH 265          
BLAST of FC930081 vs. ExPASy Swiss-Prot
Match: PEM3_PHACH (Manganese peroxidase H3 OS=Phanerochaete chrysosporium PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 48/166 (28.92%), Postives = 76/166 (45.78%), Query Frame = 3
Query:  180 MLRIAWHSAGTYDVKT--KTGGPFGTMRL--AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGV-EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFE-GPWTRNPLIFDNSYFTELL 659
            ++R+ +H A           GG  G+M L    E   SANNG+D +V  L PF ++  TIS  D+ Q  G V +    G P + F   R +K  P  +G +P+ +     + + F      S  ++V+L   H++ R  K     +  P+   P +FD   F E+L
Sbjct:   65 VIRLTFHDAIAISQSKGPSAGGADGSMLLFPTIEPNFSANNGIDDSVNNLIPFMQKHNTISAGDIVQFTGAVALTNCPGAPQLEFLARRPNKTIPAIDGLIPEPQDSVTSILERFKDAGNFSPFEVVSLLASHSVARADKVDETIDAAPFDTTPFVFDTQIFLEVL 230          
BLAST of FC930081 vs. ExPASy Swiss-Prot
Match: KATG2_CELJU (Catalase-peroxidase 2 OS=Cellvibrio japonicus (strain Ueda107) GN=katG2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 68/243 (27.98%), Postives = 92/243 (37.86%), Query Frame = 3
Query:  174 PLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP------PQEGRLPDAKQGNDH---------------------------------LRQVFGAQMGLSDKDIVAL-SGGHTLGRCH----------KE--------------------------RSGFEGPWTRNPLIFDNSYFTELLTGE 668
            P  +R+AWHSAGTY +    GG   G  R     +   N  LD A RLL P K+++  +IS+ADL  L G V +E  G     F  GR D  E       P++  L D +   D                                  +R  FG +M ++D++ VAL +GGHT G+ H          KE                           SG EG W+ NP+ +   Y   L   E
Sbjct:   99 PFFIRMAWHSAGTYRIYDGRGGAGGGQQRFEPLNSWPDNVNLDRARRLLWPIKQKYGSSISWADLMVLTGNVALESMGFKTFGFAGGRQDDWEADTVYWGPEKKWLDDKRYSGDRTLEKPLAAVQMGLIYVNPEGPNGVPDPLLAAKDIRDTFG-RMAMNDEETVALIAGGHTFGKAHGAHKPETCLGKEPAAAGIEEQGLGWTNKCGKGNAEDTITSGLEGAWSVNPIAWTTQYLDNLFAFE 340          
BLAST of FC930081 vs. ExPASy Swiss-Prot
Match: PEM2_PHLRA (Manganese peroxidase 2 OS=Phlebia radiata GN=mnp2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 47/146 (32.19%), Postives = 67/146 (45.89%), Query Frame = 3
Query:  234 GGPFGTMRL--AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGV-EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRC-HKERSGFEGPWTRNPLIFDNSYFTELL 659
            GG  G+M +    E A   N G+  +V  L PF  QFPTIS  DL Q AG V +    G P + F  GR +   P  +G +P+ +     +   F      S  ++VAL   H++ R  H + +    P+   P  FD   F E+L
Sbjct:   85 GGADGSMLIFPTVEPAFFPNLGIADSVNNLIPFLSQFPTISAGDLVQFAGAVAISNCPGAPQLEFLAGRPNATAPAIDGLIPEPQDDVTKILARFKDAGNFSPAEVVALLASHSIARADHVDPTLDAAPFDSTPFDFDTQIFLEVL 230          
The following BLAST results are available for this feature:
BLAST of FC930081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
KATG_CHRSD5.970e-1227.94Catalase-peroxidase OS=Chromohalobacter salexigens... [more]
PEM4_PHACH7.798e-1233.56Manganese peroxidase H4 OS=Phanerochaete chrysospo... [more]
KATG_STRRE7.798e-1234.81Catalase-peroxidase OS=Streptomyces reticuli GN=ka... [more]
KATG_CAUCR7.798e-1232.77Catalase-peroxidase OS=Caulobacter crescentus GN=k... [more]
KATG_SOLUE1.330e-1135.80Catalase-peroxidase OS=Solibacter usitatus (strain... [more]
KATG3_MYCS21.330e-1127.63Catalase-peroxidase 3 OS=Mycobacterium smegmatis G... [more]
KATG_RHOP52.269e-1134.66Catalase-peroxidase OS=Rhodopseudomonas palustris ... [more]
PEM3_PHACH2.963e-1128.92Manganese peroxidase H3 OS=Phanerochaete chrysospo... [more]
KATG2_CELJU2.963e-1127.98Catalase-peroxidase 2 OS=Cellvibrio japonicus (str... [more]
PEM2_PHLRA3.870e-1132.19Manganese peroxidase 2 OS=Phlebia radiata GN=mnp2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34003F01EF PostHarvC1 Citrus clementina cDNA clone C34003F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930081 ID=FC930081; Name=FC930081; organism=Citrus clementina; type=EST; length=713bp
GGTGCTCTGCTCGTGCCACTCTCGTTTGTTAAGGATTTGCGTCTCTCTTT
CTCATTTCATTCAGCGTTGAAAAGATGACGAAGAATTACCCCACTGTTAG
CGAGGATTACAAGAAGGCCGTGGAGAAATGCAAGAGGAAGCTCAGAGGCT
TCATCGCTGAGAAGAACTGCGCTCCACTCATGCTCCGTATCGCGTGGCAC
TCAGCTGGTACATATGATGTGAAGACCAAGACCGGAGGTCCATTCGGAAC
CATGAGGCTCGCTGCTGAGCAGGCACACTCAGCCAACAACGGCCTCGATA
TTGCCGTTAGGCTTTTGGAGCCGTTCAAGGAGCAGTTCCCTACCATCTCC
TACGCTGACCTTTATCAGCTTGCTGGTGTTGTTGGCGTTGAGGTTACCGG
TGGGCCCGATATCCCCTTCCACCCGGGAAGAGATGACAAGGCTGAGCCAC
CTCAAGAAGGCCGGCTTCCTGATGCTAAACAGGGTAATGATCACTTGAGG
CAAGTCTTTGGTGCTCAGATGGGCCTCAGCGACAAGGATATTGTTGCTCT
CTCTGGTGGCCACACCCTGGGAAGGTGCCACAAGGAGAGGTCTGGATTTG
AGGGACCATGGACCCGCAACCCTCTCATTTTTGACAATTCCTACTTCACG
GAGCTCTTGACTGGTGAGAAGGATGGTCTTCTGCATTGCCATCCGACAAG
CCCTTCTGGATGA
back to top