FC930081

Overview
NameFC930081
Unique NameFC930081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930081 vs. ExPASy Swiss-Prot
Match: KATG_LEPBP (Catalase-peroxidase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=katG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 68/239 (28.45%), Postives = 91/239 (38.08%), Query Frame = 3 
Query:  174 PLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP------PQEGRLPDAK-QGNDHL--------------------------------RQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE------------------------------------RSGFEGPWTRNPLIFDNSYFTEL 656
            P  +R+AWHSAGTY +    GG   G  R     +   N  LD A RLL P K+++   IS+ADL  L G V +E  G     F  GR D  E       P++  L D + +GN  L                                R+ FG +M ++D++ VAL +GGHT G+ H +                                     SG EG WT NP  +   Y   L
Sbjct:  102 PFFIRMAWHSAGTYRISDGRGGAGGGQQRFEPLNSWPDNANLDKARRLLWPIKKKYGKKISWADLMVLTGNVALESMGFKTYGFAGGRTDDWEADLVYWGPEKKFLEDQRYKGNRELKNPLAAVQMGLIYVNPEGPNGNPDPLAAAKDIRETFG-RMAMNDEETVALIAGGHTFGKAHGKSDPSKHVGKEPAAAGLEEQGFGWKNNYKKGNAEDTITSGLEGAWTANPTKWTTQYLNNL 339
[Close]
BLAST of FC930081 vs. ExPASy Swiss-Prot
Match: KATG_LEPBA (Catalase-peroxidase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=katG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 68/239 (28.45%), Postives = 91/239 (38.08%), Query Frame = 3 
Query:  174 PLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP------PQEGRLPDAK-QGNDHL--------------------------------RQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE------------------------------------RSGFEGPWTRNPLIFDNSYFTEL 656
            P  +R+AWHSAGTY +    GG   G  R     +   N  LD A RLL P K+++   IS+ADL  L G V +E  G     F  GR D  E       P++  L D + +GN  L                                R+ FG +M ++D++ VAL +GGHT G+ H +                                     SG EG WT NP  +   Y   L
Sbjct:  102 PFFIRMAWHSAGTYRISDGRGGAGGGQQRFEPLNSWPDNANLDKARRLLWPIKKKYGKKISWADLMVLTGNVALESMGFKTYGFAGGRTDDWEADLVYWGPEKKFLEDQRYKGNRELKNPLAAVQMGLIYVNPEGPNGNPDPLAAAKDIRETFG-RMAMNDEETVALIAGGHTFGKAHGKSDPSKHVGKEPAAAGLEEQGFGWKNNYKKGNAEDTITSGLEGAWTANPTKWTTQYLNNL 339
The following BLAST results are available for this feature:
BLAST of FC930081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
KATG_LEPBP6.601e-1128.45Catalase-peroxidase OS=Leptospira biflexa serovar ... [more]
KATG_LEPBA6.601e-1128.45Catalase-peroxidase OS=Leptospira biflexa serovar ... [more]

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Properties
Property NameValue
Genbank descriptionC34003F01EF PostHarvC1 Citrus clementina cDNA clone C34003F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930081 ID=FC930081; Name=FC930081; organism=Citrus clementina; type=EST; length=713bp
GGTGCTCTGCTCGTGCCACTCTCGTTTGTTAAGGATTTGCGTCTCTCTTT
CTCATTTCATTCAGCGTTGAAAAGATGACGAAGAATTACCCCACTGTTAG
CGAGGATTACAAGAAGGCCGTGGAGAAATGCAAGAGGAAGCTCAGAGGCT
TCATCGCTGAGAAGAACTGCGCTCCACTCATGCTCCGTATCGCGTGGCAC
TCAGCTGGTACATATGATGTGAAGACCAAGACCGGAGGTCCATTCGGAAC
CATGAGGCTCGCTGCTGAGCAGGCACACTCAGCCAACAACGGCCTCGATA
TTGCCGTTAGGCTTTTGGAGCCGTTCAAGGAGCAGTTCCCTACCATCTCC
TACGCTGACCTTTATCAGCTTGCTGGTGTTGTTGGCGTTGAGGTTACCGG
TGGGCCCGATATCCCCTTCCACCCGGGAAGAGATGACAAGGCTGAGCCAC
CTCAAGAAGGCCGGCTTCCTGATGCTAAACAGGGTAATGATCACTTGAGG
CAAGTCTTTGGTGCTCAGATGGGCCTCAGCGACAAGGATATTGTTGCTCT
CTCTGGTGGCCACACCCTGGGAAGGTGCCACAAGGAGAGGTCTGGATTTG
AGGGACCATGGACCCGCAACCCTCTCATTTTTGACAATTCCTACTTCACG
GAGCTCTTGACTGGTGAGAAGGATGGTCTTCTGCATTGCCATCCGACAAG
CCCTTCTGGATGA
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