FC930082

Overview
NameFC930082
Unique NameFC930082
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 72/162 (44.44%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  217 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPIL--PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGMHGGL 696
            F  +  + +KAY S EE   RF +F+ NL    +R     S   G+ +F+DLT  EF+  YLGL +     K    A        DLP   DWR+KGAV PVKDQG CGSCW+FST  A+EG N + TG L SLSEQ+L+DCD         + +SG +GGL
Sbjct:   51 FESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEINSYWLGLNEFADLTHEEFKGRYLGLAKPQFSRKRQPSANFRYRDITDLPKSVDWRKKGAVAPVKDQGQCGSCWAFSTVAAVEGINQITTGNLSSLSEQELIDCD--------TTFNSGCNGGL 204          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 75/164 (45.73%), Postives = 91/164 (55.49%), Query Frame = 1
Query:  208 EHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYL-GLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGMHGGL 696
            E  F+ FKKK+ K Y   +E   RF  F+ N+ +A  +   +P AT GVT FSD+T  EFR  Y  G        K   +   + T   PA  DWREKGAV PVK QG CGSCW+FST G +EG   +A   LVSLSEQ LV CD         + DSG +GGL
Sbjct:   38 EMRFAAFKKKYGKVYKDAKEEAFRFRAFEENMEQAKIQAAANPYATFGVTPFSDMTREEFRARYRNGASYFAAAQKRLRKTVNVTTGRAPAAVDWREKGAVTPVKVQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCD---------TIDSGCNGGL 192          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 69/143 (48.25%), Postives = 90/143 (62.94%), Query Frame = 1
Query:  217 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDP-SATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL-PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCD 639
            F  F   +N+ Y S+EE   R T+F  N+ RA + Q LD  +A +G+T+FSDLT  EF   YL     L+       +P    NDL P ++DWR+KGAV  VK+QG CGSCW+FS TG +EG  FL  G L+SLSEQ+L+DCD
Sbjct:  165 FKDFMTTYNRTYESREEAQWRLTVFARNMIRAQKIQALDRGTAQYGITKFSDLTEEEFHTIYLN--PLLQKESGRKMSPAKSINDLAPPEWDWRKKGAVTEVKNQGMCGSCWAFSVTGNVEGQWFLNRGTLLSLSEQELLDCD 305          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: CRUST_PANBO (Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.541e-28
Identity = 71/145 (48.97%), Postives = 83/145 (57.24%), Query Frame = 1
Query:  226 FKKKFNKAYASQEEHDRRFTIFKANLR----RAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLR----LPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDC 636
            FK KF K YA+ EE   R ++F   L+       R  K + +    +  FSDLT  E   T  G+ R+      LPK A      PT  + AD DWR KGAV PVKDQG CGSCW+FS   ALEGA+FL TG LVSLSEQ LVDC
Sbjct:   23 FKTKFGKKYANSEEESHRMSVFMDKLKFIQEHNERYDKGEVTYWLKINNFSDLTHEEVLATKTGMTRRRHPLSVLPKSA------PTTPMAADVDWRNKGAVTPVKDQGQCGSCWAFSAVAALEGAHFLKTGDLVSLSEQNLVDC 161          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.286e-27
Identity = 68/145 (46.90%), Postives = 87/145 (60.00%), Query Frame = 1
Query:  265 EHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND-LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGMHGGL 696
            E DRRF IFK NLR      + + S   G+T+F+DLT  E+R  YLG + + +  +           D LP   DWR+KGAV  VKDQG CGSCW+FST GA+EG N + TG L++LSEQ+LVDCD         S + G +GGL
Sbjct:   68 EKDRRFEIFKDNLRFVDEHNEKNLSYRLGLTRFADLTNDEYRSKYLGAKMEKKGERRTSLRYEARVGDELPESIDWRKKGAVAEVKDQGGCGSCWAFSTIGAVEGINQIVTGDLITLSEQELVDCD--------TSYNEGCNGGL 204          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.865e-27
Identity = 70/143 (48.95%), Postives = 89/143 (62.24%), Query Frame = 1
Query:  217 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDP-SATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL-PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCD 639
            F  F   +N+ Y S+EE   R ++F  N+ RA + Q LD  +A +GVT+FSDLT  EFR  YL    +        QA  +   DL P ++DWR KGAV  VKDQG CGSCW+FS TG +EG  FL  G L+SLSEQ+L+DCD
Sbjct:  187 FKNFVITYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRGTAQYGVTKFSDLTEEEFRTIYLNTLLRKEPGNKMKQAKSV--GDLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD 327          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.742e-27
Identity = 67/163 (41.10%), Postives = 94/163 (57.67%), Query Frame = 1
Query:  217 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKL-RLPKDADQAPIL--PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGMHGGL 696
            F  +   F KAY + EE   RF +FK NL+      K   S   G+ +F+DL+  EF++ YLGL+  + R  ++   A         +P   DWR+KGAV  VK+QGSCGSCW+FST  A+EG N + TG L +LSEQ+L+DCD         + ++G +GGL
Sbjct:   51 FENWISNFEKAYETVEEKFLRFEVFKDNLKHIDETNKKGKSYWLGLNEFADLSHEEFKKMYLGLKTDIVRRDEERSYAEFAYRDVEAVPKSVDWRKKGAVAEVKNQGSCGSCWAFSTVAAVEGINKIVTGNLTTLSEQELIDCD--------TTYNNGCNGGL 205          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.384e-27
Identity = 67/152 (44.08%), Postives = 95/152 (62.50%), Query Frame = 1
Query:  265 EHDRRFTIFKANLRRAARRQKLDPSATH--GVTQFSDLTPAEFRRTYLGLR----RKLRLPKDADQ--APILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGMHGGL 696
            + D RF IFK NLR      + + +AT+  G+T F++LT  E+R  YLG R    R++   K+ +   +  +  +++P   DWR+KGAV  +KDQG+CGSCW+FST  A+EG N + TG+LVSLSEQ+LVDCD         S + G +GGL
Sbjct:   24 QQDERFNIFKDNLRFIDLHNENNKNATYKLGLTIFANLTNDEYRSLYLGARTEPVRRITKAKNVNMKYSAAVNVDEVPVTVDWRQKGAVNAIKDQGTCGSCWAFSTAAAVEGINKIVTGELVSLSEQELVDCDK--------SYNQGCNGGL 167          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.384e-27
Identity = 81/196 (41.33%), Postives = 99/196 (50.51%), Query Frame = 1
Query:  118 DVDQLIRQVTDGGDEILSHHESTNNDLLGAEHH---FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGMHGGL 696
            D    I+ V+D   E+    E T   +LG   H   FS F  ++ K Y S EE   RF++FK NL       K   S    + QF+DLT  EF+R  LG  +               T  +P   DWRE G V PVK+QG CGSCW+FSTTGALE A   A GK +SLSEQQLVDC    +       + G HGGL
Sbjct:   27 DESNPIKMVSDNLHEL----EDTVVQILGQSRHVLSFSRFTHRYGKKYQSVEEMKLRFSVFKENLDLIRSTNKKGLSYKLSLNQFADLTWQEFQRYKLGAAQNCSATLKGSHKITEAT--VPDTKDWREDGIVSPVKEQGHCGSCWTFSTTGALEAAYHQAFGKGISLSEQQLVDCAGTFN-------NFGCHGGL 209          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.089e-26
Identity = 67/140 (47.86%), Postives = 89/140 (63.57%), Query Frame = 1
Query:  244 KAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH--GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND-LPADFDWREKGAVGP-VKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 651
            K Y    E +RRF IFK NL+R       DP+ ++  G+ +FSDLT  EF+ +YLG + + +   D  +       D LP + DWRE+GAV P VK QG CGSCW+F+ TGA+EG N + TG+LVSLSEQ+L+DCD   D
Sbjct:   50 KNYNGLGEKERRFKIFKDNLKRIEEHNS-DPNRSYERGLNKFSDLTADEFQASYLGGKMEKKSLSDVAERYQYKEGDVLPDEVDWRERGAVVPRVKRQGECGSCWAFAATGAVEGINQITTGELVSLSEQELIDCDRGND 188          
The following BLAST results are available for this feature:
BLAST of FC930082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
XCP1_ARATH5.222e-2944.44Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]
CYSP_TRYBB5.222e-2945.73Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
CATF_MOUSE1.984e-2848.25Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
CRUST_PANBO7.541e-2848.97Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1[more]
RD21A_ARATH1.286e-2746.90Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CATF_HUMAN2.865e-2748.95Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
XCP2_ARATH3.742e-2741.10Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]
CYSP4_BRANA6.384e-2744.08Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
ALEUL_ARATH6.384e-2741.33Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
CPR2_ARATH1.089e-2647.86Probable cysteine proteinase At3g43960 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC34003F02EF PostHarvC1 Citrus clementina cDNA clone C34003F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930082 ID=FC930082; Name=FC930082; organism=Citrus clementina; type=EST; length=698bp
GAACGAACGCTTCTATTGATATCAGCATTGTCTAAAAACATGGGATCTAA
AACAGTAGTTTTCTTTCTGGTCTCTCTCGTCGTCGTCTCCGCCGTTTCAT
CAGGGACGTTGATCGACGATGTTGATCAGCTGATCAGGCAAGTAACGGAC
GGCGGTGACGAGATCCTAAGCCACCACGAGAGCACCAACAACGACCTCTT
GGGCGCAGAGCACCACTTCTCCCTATTCAAGAAGAAGTTCAATAAAGCGT
ACGCTTCGCAGGAGGAGCACGACCGTAGGTTCACTATTTTCAAGGCCAAC
TTGCGACGCGCCGCGCGTCGCCAGAAGCTCGACCCGAGCGCCACCCACGG
CGTCACTCAGTTCTCCGACTTGACTCCGGCCGAGTTCCGCCGGACGTACC
TTGGCCTCAGGAGGAAGCTGAGGCTGCCTAAGGATGCGGATCAGGCGCCG
ATCTTGCCTACGAATGATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGG
CGCTGTAGGCCCTGTTAAAGATCAGGGTTCATGCGGATCATGCTGGAGTT
TCAGTACAACAGGGGCCTTGGAAGGTGCTAACTTCCTGGCAACTGGAAAG
CTTGTGAGCCTCAGTGAGCAACAGCTTGTGGATTGCGATCATGAGTGTGA
TCCTGAGGAACCAGGTTCTTGTGATTCTGGGATGCATGGTGGGCTTAT
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