FC930082

Overview
NameFC930082
Unique NameFC930082
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 60/153 (39.22%), Postives = 78/153 (50.98%), Query Frame = 1
Query:  208 EHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND---LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHE 645
            +HH++L+KK + K Y  + E   R  I++ NL+             H    G+    D+T  E     + L   LR+P    +     +N    LP   DWREKG V  VK QGSCG+CW+FS  GALE    L TGKLVSLS Q LVDC  +
Sbjct:   25 DHHWNLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEV----MSLMSSLRVPNQWQRNITYKSNPNQMLPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSEK 173          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 61/153 (39.87%), Postives = 77/153 (50.33%), Query Frame = 1
Query:  208 EHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND---LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHE 645
            +HH+ L+KK + K Y  + E   R  I++ NL+             H    G+    D+T  E     + L   LR+P    +     +N    LP   DWREKG V  VK QGSCG+CW+FS  GALE    L TGKLVSLS Q LVDC  E
Sbjct:   25 DHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEV----MSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTE 173          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 58/177 (32.77%), Postives = 82/177 (46.33%), Query Frame = 1
Query:  193 DLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPIL---------PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGMHGGL 696
            D+  A  ++  F K+ NK Y + ++ D  F  FK NL        +   A +G+ +FSD+    F   + GL   L    D++  P           P+   P  FDWR+   V  VK+QG CGSCW+F+  G +E    +    L+ LSEQQL+DCD           D G  GGL
Sbjct:   25 DIDSASVYYENFIKQHNKEYTTPDQRDAAFVNFKRNLADMNAMNNVSNQAVYGINKFSDIDKITFVNEHAGLVSNLINSTDSNFDPYRLCEYVTVAGPSARTPESFDWRKLNKVTKVKEQGVCGSCWAFAAIGNIESQYAIMHDSLIDLSEQQLLDCDR---------VDQGCDGGL 192          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 59/183 (32.24%), Postives = 90/183 (49.18%), Query Frame = 1
Query:  172 HHESTNN-----DLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILP---TNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGMHGGL 696
            +H S NN     ++  A  +F  F  ++NK Y S++E   R+ IF+ N+    ++   + SA + + +F+D+   E    + GL     L  +  +  ++        P  FDWR    +  VKDQG CG+CW F++ GALE    +   +L+ LSEQQLVDCD           D G  GGL
Sbjct:   20 NHASANNKPMLYNINSAPLYFEKFITQYNKQYKSEDEKKYRYNIFRHNIESINQKNSRNDSAVYKINRFADMPKNEIVIRHTGLASG-ELGLNFCETIVVDGPAQRQRPVSFDWRSMNKITSVKDQGMCGACWRFASLGALESQYAIKYDRLIDLSEQQLVDCDF---------VDMGCDGGL 192          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 60/193 (31.09%), Postives = 97/193 (50.26%), Query Frame = 1
Query:  130 LIRQVTDGGDEILSHHESTN-NDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILP---TNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGMHGGL 696
            L+  V    D++++     N  ++  A  +F  F  ++NK Y+S++E   R+ IF+ N+     +   + SA + + +F+D+T  E    + GL     +  +  +  ++        PA+FDWR    V  VKDQG CG+CW+F+  GALE    +   +L+ L+EQQLVDCD           D G  GGL
Sbjct:   10 LVSAVLTSHDQVVAVTIKPNLYNINSAPLYFEKFISQYNKQYSSEDEKKYRYNIFRHNIESINAKNSRNDSAVYKINRFADMTKNEVVNRHTGLASG-DIGANFCETIVVDGPGQRQRPANFDWRNYNKVTSVKDQGMCGACWAFAGLGALESQYAIKYDRLIDLAEQQLVDCDF---------VDMGCDGGL 192          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 59/150 (39.33%), Postives = 75/150 (50.00%), Query Frame = 1
Query:  208 EHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHE 645
            ++H+ L+KK   K Y  + E + R  I++ NL+             H    G+    D+T  E       LR   + PK            LP   DWREKG V  VK QGSCG+CW+FS  GALEG   L TGKL+SLS Q LVDC +E
Sbjct:   33 DYHWDLWKKTHEKEYKDKNEEEVRRLIWEKNLKFIMIHNLEYSMGMHTYQVGMNDMGDMTNEEISCRMGALRISRQSPKTVTFRSY-SNRTLPDTVDWREKGCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDCSNE 181          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 63/169 (37.28%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  217 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLD-PSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPIL--------PTNDLPADFDWRE-KGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGMHGG 693
            F LF+ +FN++Y S EEH  R  IF  NL +A R Q+ D  +A  GVT FSDLT  EF + Y G RR       A   P +        P   +P   DWR+   A+ P+KDQ +C  CW+ +  G +E    ++    V +S Q+L+DC         G C  G HGG
Sbjct:   42 FKLFQIQFNRSYLSPEEHAHRLDIFAHNLAQAQRLQEEDLGTAEFGVTPFSDLTEEEFGQLY-GYRRA------AGGVPSMGREIRSEEPEESVPFSCDWRKVASAISPIKDQKNCNCCWAMAAAGNIETLWRISFWDFVDVSVQELLDC---------GRCGDGCHGG 194          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 59/174 (33.91%), Postives = 87/174 (50.00%), Query Frame = 1
Query:  193 DLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRL--PKDADQAPILPTND----LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGMHGGL 696
            D+  A+  F+ F  K+NK Y   +E + RF IFK NL     R  L+ SA   +   +D++  E  +   GL+  L     K++   P + + D    +P  FDWR++ +V  VK Q  CGSCW+FS    +E    +     + LSEQQLVDCD           ++G +GGL
Sbjct:   35 DMSNAQELFNEFVVKYNKVYKDDQEKEARFEIFKQNLADINARNALEDSAMFEINSRADISSNELLQKLTGLKLSLMRGEKKNSFCTPTVISGDSSGKVPDSFDWRDRNSVTSVKMQKECGSCWAFSAVANIESLYHIKHNVSLDLSEQQLVDCD---------KVNNGCNGGL 199          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: ANAN_ANACO (Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 54/146 (36.99%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  217 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAAR-RQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL-----PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDC 636
            F  +  ++ + Y   +E   RF IFK N+        +   S T G+ QF+D+T  EF   Y GL     LP +  + P++  +D+     P   DWR+ GAV  VK+QG CGSCW+F++   +E    +  G LVSLSEQQ++DC
Sbjct:   37 FEEWMAEYGRVYKDNDEKMLRFQIFKNNVNHIETFNNRNGNSYTLGINQFTDMTNNEFVAQYTGLS----LPLNIKREPVVSFDDVDISSVPQSIDWRDSGAVTSVKNQGRCGSCWAFASIATVESIYKIKRGNLVSLSEQQVLDC 178          
BLAST of FC930082 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 59/142 (41.55%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  226 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKL----DPSATHGVTQFSDLTPAEFRRTYLGLRRKLR-LPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDC 636
            FK ++ + Y   +E   R  +F+ N +      K     + +    + QF D+T  EF     G ++  R  PK    A   P   + AD DWR K  V PVKDQ  CGSCW+FS TGALEG +FL   +LVSLSEQQLVDC
Sbjct:   23 FKTQYGRKYGDAKEELYRQRVFQQNEQLIEDFNKKFENGEVTFKVAMNQFGDMTNEEFNAVMKGYKKGSRGEPKAVFTAEAGP---MAADVDWRTKALVTPVKDQEQCGSCWAFSATGALEGQHFLKNDELVSLSEQQLVDC 161          
The following BLAST results are available for this feature:
BLAST of FC930082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CATS_SAIBB1.166e-2039.22Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
CATS_HUMAN1.166e-2039.87Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
CATV_NPVST4.431e-2032.77Viral cathepsin OS=Spodoptera litura multicapsid n... [more]
CATV_NPVSE7.558e-2032.24Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATV_NPVMC7.558e-2031.09Viral cathepsin OS=Mamestra configurata nucleopoly... [more]
CATS_MOUSE7.558e-2039.33Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CATW_HUMAN9.871e-2037.28Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]
CATV_GVXN9.871e-2033.91Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]
ANAN_ANACO9.871e-2036.99Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2[more]
CYSP3_HOMAM1.289e-1941.55Digestive cysteine proteinase 3 OS=Homarus america... [more]

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Properties
Property NameValue
Genbank descriptionC34003F02EF PostHarvC1 Citrus clementina cDNA clone C34003F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930082 ID=FC930082; Name=FC930082; organism=Citrus clementina; type=EST; length=698bp
GAACGAACGCTTCTATTGATATCAGCATTGTCTAAAAACATGGGATCTAA
AACAGTAGTTTTCTTTCTGGTCTCTCTCGTCGTCGTCTCCGCCGTTTCAT
CAGGGACGTTGATCGACGATGTTGATCAGCTGATCAGGCAAGTAACGGAC
GGCGGTGACGAGATCCTAAGCCACCACGAGAGCACCAACAACGACCTCTT
GGGCGCAGAGCACCACTTCTCCCTATTCAAGAAGAAGTTCAATAAAGCGT
ACGCTTCGCAGGAGGAGCACGACCGTAGGTTCACTATTTTCAAGGCCAAC
TTGCGACGCGCCGCGCGTCGCCAGAAGCTCGACCCGAGCGCCACCCACGG
CGTCACTCAGTTCTCCGACTTGACTCCGGCCGAGTTCCGCCGGACGTACC
TTGGCCTCAGGAGGAAGCTGAGGCTGCCTAAGGATGCGGATCAGGCGCCG
ATCTTGCCTACGAATGATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGG
CGCTGTAGGCCCTGTTAAAGATCAGGGTTCATGCGGATCATGCTGGAGTT
TCAGTACAACAGGGGCCTTGGAAGGTGCTAACTTCCTGGCAACTGGAAAG
CTTGTGAGCCTCAGTGAGCAACAGCTTGTGGATTGCGATCATGAGTGTGA
TCCTGAGGAACCAGGTTCTTGTGATTCTGGGATGCATGGTGGGCTTAT
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