FC930083

Overview
NameFC930083
Unique NameFC930083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: FA18B_PONAB (Protein FAM18B OS=Pongo abelii GN=FAM18B PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.617e-27
Identity = 58/171 (33.92%), Postives = 94/171 (54.97%), Query Frame = 1
Query:   94 NQPPGENYANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFECLDHESMAR--MNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASGF 600
            N+P      +P   FFH+ F+ +A+  Y+L  L   SF+   V  +LL + DFW VKNV+GR++VGLRWWN I++ G+S W FE     S     +++ +S +FW  L    V W++    +L  F+  +L VV + + L  AN+ G+ +C+  ++K +   A+      F
Sbjct:   24 NRPRKAKIRHPVASFFHLFFRVSAIIVYLLCELLSSSFITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRKNLTSMATSYFGKQF 194          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_DEBHA (Golgi apparatus membrane protein TVP23 OS=Debaryomyces hansenii GN=TVP23 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.723e-27
Identity = 60/158 (37.97%), Postives = 95/158 (60.13%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFF------DSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEI------NDMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAK 555
            ++P    F++ F+ + L  Y+   L        + F++ F++ VLL + DFW +KN++GR+LVGLRWWNE+      N   E+VW FE +D      +N  DS +FW  LY+   AW+VLG  +L++F+  YLL++ + ++LS+ N + FTKC K  K
Sbjct:   47 SHPIALLFYIFFRVSPLFIYLFGTLLIGIITKKNKFILHFIIIVLLVSGDFWNLKNIAGRLLVGLRWWNEVSVIKSTNGEFENVWVFETVDPNRY--INPIDSKVFWTLLYVQPAAWVVLGFLALLKFEFLYLLLIIISISLSLTNAMAFTKCDKFGK 202          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: FA18B_HUMAN (Protein FAM18B OS=Homo sapiens GN=FAM18B PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.723e-27
Identity = 58/171 (33.92%), Postives = 94/171 (54.97%), Query Frame = 1
Query:   94 NQPPGENYANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFECLDHESMAR--MNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASGF 600
            N+P      +P   FFH+ F+ +A+  Y+L  L   SF+   V  +LL + DFW VKNV+GR++VGLRWWN I++ G+S W FE     S     +++ +S +FW  L    V W++    +L  F+  +L VV + + L  AN+ G+ +C+  ++K +   A+      F
Sbjct:   24 NRPRKAKIRHPVASFFHLFFRVSAIIVYLLCELLSSSFITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVRSRKHLTSMATSYFGKQF 194          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_ASPOR (Golgi apparatus membrane protein tvp23 OS=Aspergillus oryzae GN=tvp23 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.052e-26
Identity = 61/167 (36.53%), Postives = 100/167 (59.88%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIN-DMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQA-DYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASGFTSTL 612
            A+P T    + F+ +AL  Y+   LF  +F+++F++T+LL A DF+ +KN++GR LVGLRWWNE+N   G+S W FE  D  +  R+   D   FW +LY++   W+ L I ++IR  +  +L +V + L L+I N + F++C  D   Q   FA++ +  G  + +
Sbjct:   21 AHPITLLCFLGFRTSALLMYLFGVLFIKNFILVFIITLLLLAADFYYLKNIAGRRLVGLRWWNEVNVASGDSHWVFESSD-PTTRRIAATDKRFFWLSLYVTPALWVGLAILAIIRLSSVIWLSLVAIALILTITNTLAFSRC--DRFSQASTFANRALTGGIVNNI 184          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_PICGU (Golgi apparatus membrane protein TVP23 OS=Pichia guilliermondii GN=TVP23 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.795e-26
Identity = 67/176 (38.07%), Postives = 100/176 (56.82%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFF------DSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMG-------ESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASGFTS 606
            ++P    F++ F+   +  YI    F       + F++ F+V VLL + DFW +KNV+GR+LVGLRWWNE+N +        E+VW FE  D      +N  DS +FW  LY   VAWIVLGI ++++F+  YL+++ + + LS  N + FTKC K  K       +  +A+GF S
Sbjct:   54 SHPVALLFYIGFRILPIEIYIFGNFFIGFITKKNRFILHFIVLVLLISGDFWNLKNVAGRLLVGLRWWNEVNFIESSSTGEFENVWVFESADPSRY--INPIDSKVFWTLLYGQPVAWIVLGILAVLKFEFLYLILILIAIFLSFTNALAFTKCDKFGK-------ANNLATGFLS 220          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_NEOFI (Golgi apparatus membrane protein tvp23 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tvp23 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.344e-26
Identity = 60/167 (35.93%), Postives = 99/167 (59.28%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIND-MGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQA-DYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASGFTSTL 612
            A+P T  F + F+ +AL  Y+   LF  +FV++F++T+LL + DF+ +KN++GR LVGLRWWNE+N   G+S W FE  D  +   ++  D   FW +LY++   WI L + +++R  +  +L +V + L L+I N + F++C  D   Q   +AS+       + L
Sbjct:   18 AHPITLLFFLGFRTSALLMYLFGVLFIKNFVLVFILTLLLLSADFYYLKNIAGRRLVGLRWWNEVNTATGDSHWVFESSD-PATRTISATDKRFFWLSLYVTPALWIGLAVLAIVRLSSVIWLSLVAIALVLTITNTVAFSRC--DRFSQASTYASRAFGGNIVNNL 181          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_ASPTN (Golgi apparatus membrane protein tvp23 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tvp23 PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.344e-26
Identity = 60/166 (36.14%), Postives = 97/166 (58.43%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIN-DMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASGFTSTL 612
            A+P T    +  + +AL  Y+   LF   F+++F++T+LL A DF+ +KN++GR LVGLRWWNE+N   G+S W FE  D  +   +   D   FW +LY++   WI L I ++I+    +L +V + L L+I N + F++C  D   Q   FA++ ++ G  S +
Sbjct:   19 AHPVTLLCFLGIRLSALLMYLFGILFIKHFILVFIITLLLLAADFYYLKNIAGRRLVGLRWWNEVNTTTGDSHWVFESSDPNTRT-ITATDKRFFWLSLYVTPAFWIGLAILAVIQLSVIWLSLVVIALVLTITNTVAFSRC--DRFSQASTFANRALSGGIVSNI 181          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_PHANO (Golgi apparatus membrane protein TVP23 OS=Phaeosphaeria nodorum GN=TVP23 PE=3 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 3.062e-26
Identity = 65/168 (38.69%), Postives = 97/168 (57.74%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSA-LFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIND-MGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTI-ASGFTSTL 612
            ++P T    + F+ ++L  Y+L   L   +FV+IF+VT+LL A+DF+ +KN++GR LVGLRWWNE++   G+  W FE  D ES    N  D   FW  LY+  V W+V+ + +L  F   +L +V + L L+I N + F++C  D   Q   FAS  +  SG    L
Sbjct:   19 SHPITLLTFLFFRISSLLVYLLGMRLLSSNFVLIFIVTILLLAMDFYYLKNIAGRRLVGLRWWNEVDGATGDGRWVFESADPES-REQNATDKRFFWMALYVQPVLWVVMAVVALFGFNFIWLTLVAIALVLTITNTLAFSRC--DKFSQASGFASNAMYGSGLARNL 183          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_COPC7 (Golgi apparatus membrane protein TVP23 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TVP23 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.222e-26
Identity = 60/148 (40.54%), Postives = 91/148 (61.49%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQ 561
            A+P   FF   F+ AA+  YIL   F D++V+  V  V+L A+DFW  +NV+GR LVGLR+WN++++ GES W FE  D    A  N  DS +FW  LY+  + W  L I S+++    ++ +V + L  +I N++GFT   +DAK++
Sbjct:   20 AHPLALFFLYFFRIAAILVYILCGWFTDNYVLSTVTVVVLLAMDFWNCRNVAGRTLVGLRFWNQVDEDGESYWVFESRDPSRPA--NPIDSKMFWIALYVFPLLWGALLIVSILKLGFAFIPIVVLALVFNITNVVGFTYADRDAKQK 165          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_ASPFU (Golgi apparatus membrane protein tvp23 OS=Aspergillus fumigatus GN=tvp23 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.222e-26
Identity = 59/167 (35.33%), Postives = 99/167 (59.28%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIND-MGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQA-DYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASGFTSTL 612
            A+P T  F + F+ +AL  Y+   LF  +FV++F++T+LL + DF+ +KN++GR LVGLRWWNE+N   G+S W FE  D  +   ++  D   FW +LY++   WI L + +++R  +  +L +V + L L+I N + F++C  D   Q   +A++       + L
Sbjct:   18 AHPITLLFFLGFRTSALLMYLFGVLFIKNFVLVFILTLLLLSADFYYLKNIAGRRLVGLRWWNEVNTATGDSHWVFESSD-PATRTISATDKRFFWLSLYVTPALWIGLAVLAIVRLSSVIWLSLVAIALVLTITNTVAFSRC--DRFSQASTYANRAFGGNIVNNL 181          
The following BLAST results are available for this feature:
BLAST of FC930083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
FA18B_PONAB3.617e-2733.92Protein FAM18B OS=Pongo abelii GN=FAM18B PE=2 SV=1[more]
TVP23_DEBHA4.723e-2737.97Golgi apparatus membrane protein TVP23 OS=Debaryom... [more]
FA18B_HUMAN4.723e-2733.92Protein FAM18B OS=Homo sapiens GN=FAM18B PE=2 SV=1[more]
TVP23_ASPOR1.052e-2636.53Golgi apparatus membrane protein tvp23 OS=Aspergil... [more]
TVP23_PICGU1.795e-2638.07Golgi apparatus membrane protein TVP23 OS=Pichia g... [more]
TVP23_NEOFI2.344e-2635.93Golgi apparatus membrane protein tvp23 OS=Neosarto... [more]
TVP23_ASPTN2.344e-2636.14Golgi apparatus membrane protein tvp23 OS=Aspergil... [more]
TVP23_PHANO3.062e-2638.69Golgi apparatus membrane protein TVP23 OS=Phaeosph... [more]
TVP23_COPC75.222e-2640.54Golgi apparatus membrane protein TVP23 OS=Coprinop... [more]
TVP23_ASPFU5.222e-2635.33Golgi apparatus membrane protein tvp23 OS=Aspergil... [more]

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Properties
Property NameValue
Genbank descriptionC34003F03EF PostHarvC1 Citrus clementina cDNA clone C34003F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930083 ID=FC930083; Name=FC930083; organism=Citrus clementina; type=EST; length=685bp
GCCGAGAAATATTTCGCCTGAAAATTTCTCGACTCTCAAAATTAAACCCC
AACAAGATTTAAATTGCGAAAATAGATTCGCGTAATGGATCTCAATCAGC
CTCCTGGTGAAAATTATGCGAACCCAAAGACATGCTTCTTTCATGTTCTC
TTCAAGGGTGCAGCTTTGGCATTTTACATACTTTCTGCCCTCTTTTTCGA
CAGCTTTGTCATCATTTTTGTGGTGACTGTCCTTCTTGCTGCTCTTGATT
TTTGGGTAGTCAAGAATGTTAGTGGGCGTATATTAGTTGGTTTGAGGTGG
TGGAATGAAATAAATGATATGGGTGAGAGTGTGTGGAAGTTTGAGTGCCT
TGACCATGAGTCCATGGCTCGCATGAACAAGAAAGATTCGTGGCTATTCT
GGTGGACCCTTTACCTTTCGGCTGTTGCTTGGATTGTGCTTGGGATATTT
TCTCTCATTAGGTTCCAAGCTGATTATCTCCTGGTTGTTGGTGTCTGTTT
GACCCTCAGCATTGCAAACATTATTGGTTTTACCAAATGCCGAAAAGATG
CTAAGAAGCAGATCCAACAATTTGCCTCCCAGACCATCGCATCCGGATTC
ACATCTACCCTACAGTCAGCTTTCAGTGTTGTCTGATTCAGTTAGAGAAG
CTGGGTGTAAGGTGGACCAGTAAACTTGCTCGTGG
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