FC930083

Overview
NameFC930083
Unique NameFC930083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_ASPFC (Golgi apparatus membrane protein tvp23 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=tvp23 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.222e-26
Identity = 59/167 (35.33%), Postives = 99/167 (59.28%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIND-MGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQA-DYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASGFTSTL 612
            A+P T  F + F+ +AL  Y+   LF  +FV++F++T+LL + DF+ +KN++GR LVGLRWWNE+N   G+S W FE  D  +   ++  D   FW +LY++   WI L + +++R  +  +L +V + L L+I N + F++C  D   Q   +A++       + L
Sbjct:   18 AHPITLLFFLGFRTSALLMYLFGVLFIKNFVLVFILTLLLLSADFYYLKNIAGRRLVGLRWWNEVNTATGDSHWVFESSD-PATRTISATDKRFFWLSLYVTPALWIGLAVLAIVRLSSVIWLSLVAIALVLTITNTVAFSRC--DRFSQASTYANRAFGGNIVNNL 181          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_PICST (Golgi apparatus membrane protein TVP23 OS=Pichia stipitis GN=TVP23 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.821e-26
Identity = 62/158 (39.24%), Postives = 93/158 (58.86%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFF------DSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIN----DMG--ESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAK 555
            ++P    F++ F+ A +  YI   LF       + F++ F++ +LL A DFW +KNV+GR+LVGLRWWNE N    ++G  E+VW FE  D      +N  DS +FW  LY   V W+V     +++FQ  YLL++ + ++LS+ N + FTKC K  K
Sbjct:   58 SHPVALLFYMFFRLAPIFIYIFGNLFIGLITSKNKFILHFIILILLFAADFWNLKNVAGRLLVGLRWWNETNATEGNVGEFENVWVFETADPNRY--INPIDSKVFWILLYAQPVVWMVFAFLCVLKFQFLYLLLIIIAISLSLTNAMAFTKCDKFGK 213          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: FA18B_DICDI (Uncharacterized FAM18-like protein 2 OS=Dictyostelium discoideum GN=DDB_G0286703 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.519e-25
Identity = 59/158 (37.34%), Postives = 95/158 (60.13%), Query Frame = 1
Query:  121 NPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDM-GESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKC-RKDAKKQIQQFASQTI 588
            +P     HVLFK +A+  Y+ S LF   F++ F++ +LL + DF+ VKN++GR+LVGLRWWN+++   G + W FE        R+N+ +S +FW TLY + + WI+  +  +I  Q  ++L+  + L+L++AN+ GF KC   +       FAS  I
Sbjct:   94 HPVAASVHVLFKLSAILLYLFSGLFGGGFILTFILCILLLSFDFYSVKNITGRLLVGLRWWNQVDPKDGSNKWYFETAPEGH--RVNQIESLIFWITLYGTPIFWILFFLKCIISLQFAWILIPIIALSLNMANVYGFYKCSNSNVSNAAATFASNYI 249          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: YC2L_CAEEL (Uncharacterized FAM18-like protein C34D4.4 OS=Caenorhabditis elegans GN=C34D4.4 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.985e-25
Identity = 53/153 (34.64%), Postives = 91/153 (59.48%), Query Frame = 1
Query:  115 YANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQF 573
            +  P     H+ FKGAAL FY  +  F +SF++ F+V + L ++DFW VKN++GR+LVGLRWWN ++  G + WKFE    + M R    D  +FW  L +   AWI   + + +  + ++++V  +   +++AN+ G+ +CR +  +Q+  +
Sbjct:   70 FGKPTIVLAHLSFKGAALFFYFFANFFTNSFIVQFLVILTLLSMDFWTVKNITGRLLVGLRWWNFVDADGNNHWKFE--SAKDMTRFATIDRRVFWLGLVVGPAAWIFFVVTAFLTLKFEWMIVALLGALMNMANLWGYLRCRWNNTEQMTSY 220          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_NEUCR (Golgi apparatus membrane protein tvp-23 OS=Neurospora crassa GN=tvp-23 PE=3 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.592e-25
Identity = 59/161 (36.65%), Postives = 95/161 (59.01%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIN-DMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASG 597
            ++P T    + F+ ++L  Y+   LF D+ V+IF++T+LL A DF+ +KN++GR LVGLRWWNE++ + G+S W FE  +  +   +N  DS  FW  +Y   + W+VL I +L   +  +L +V + L L+I N + F++C  D   Q    A    +SG
Sbjct:   16 SHPITLLTFLAFRSSSLLVYLFGLLFTDNLVMIFIITILLLAGDFYYLKNIAGRRLVGLRWWNEVDPNSGDSHWVFESSEPGTKI-INATDSRFFWLAIYAQPLLWVVLAIVALFSLKFIWLPLVAIALVLTITNSLAFSRC--DKFSQASNIAGTAFSSG 173          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_BOTFB (Golgi apparatus membrane protein tvp23 OS=Botryotinia fuckeliana (strain B05.10) GN=tvp23 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.286e-24
Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = 1
Query:  160 AALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIND-MGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASGFTSTLQSA 621
            A+L  Y+   LF  +FV+IF++T+LL A DF+ +KN++GR LVGLRWWNE++   G+S W FE  D  +   +N  DS  FW  LY   + W+ L   ++ RF+  +L ++ + L+L++ N + F++C K  +       S   +SG    + SA
Sbjct:   25 ASLLVYLFGMLFIKNFVMIFIITILLLAADFYYLKNIAGRRLVGLRWWNEVDPASGDSHWVFESSDPNTKI-INPTDSRFFWLALYSQPLLWVGLAFVAIFRFEFIWLTLIVIALSLTVTNTLAFSRCDKFGQAS-NLAGSAMYSSGIAGNIASA 177          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_PODAN (Golgi apparatus membrane protein TVP23 OS=Podospora anserina GN=TVP23 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 55/144 (38.19%), Postives = 89/144 (61.81%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIN-DMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRK 546
            ++P T    + F+ ++L  Y+   LF D+ V+IF++T+LL A DF+ +KN++GR LVGLRWWNE++   G+S W FE  +  S   +N  DS  FW  +Y   + WI L + ++  F+  +L +V + L L+I N + F++C K
Sbjct:   17 SHPITLLTFLGFRVSSLLVYLFGLLFTDNLVMIFIITILLLAADFYYLKNIAGRRLVGLRWWNEVDPSTGDSHWVFESSEPGSKV-INATDSRFFWIAIYAQPLFWIALAVVAVFSFKFIWLPLVAIALVLTITNSLAFSRCDK 159          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_ASPCL (Golgi apparatus membrane protein tvp23 OS=Aspergillus clavatus GN=tvp23 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.194e-24
Identity = 58/167 (34.73%), Postives = 95/167 (56.89%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIN-DMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRF-QADYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASGFTSTL 612
            A+P T    + F+ +AL  Y+   LF  +FV++F++T+LL + DF+ +KN++GR LVGLRWWNE+N   G+S W FE  D  +   +   D   FW  LY++   WI L + +++   +  +L +V + L L+I N + F++C  D   Q   FA++       S +
Sbjct:   18 AHPITLLCFLGFRSSALLMYLFGVLFIKNFVLVFILTLLLLSADFYYLKNIAGRRLVGLRWWNEVNTSTGDSHWVFESSD-PTTRTITATDKRFFWLGLYITPALWIGLAVLAIVTLSKIIWLSLVAIALILTITNTVAFSRC--DRFGQASTFANRAFGGSIVSNI 181          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: FA18A_HUMAN (Protein FAM18A OS=Homo sapiens GN=FAM18A PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 2.866e-24
Identity = 61/162 (37.65%), Postives = 94/162 (58.02%), Query Frame = 1
Query:  121 NPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFEC--LDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCR----KDAKKQIQQFASQTI 588
            +P   FFH+ F+ +A+  Y+    F  SFV  FV+ +LL +LDFW VKNV+GR+LVGLRWWN+I++ G+S W FE   +   S+A   + ++ +FW  L +  + WIV    +L   +  +L +V   ++L  AN+ G+  C+     D  K    F SQT+
Sbjct:   31 HPLATFFHLFFRVSAIVTYVSCDWFSKSFVGCFVMVLLLLSLDFWSVKNVTGRLLVGLRWWNQIDEDGKSHWIFEARKVSPNSIA-ATEAEARIFWLGLIICPMIWIVFFFSTLFSLKLKWLALVVAGISLQAANLYGYILCKMGGNSDIGKVTASFLSQTV 191          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_CANAL (Golgi apparatus membrane protein TVP23 OS=Candida albicans GN=TVP23 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 63/173 (36.42%), Postives = 93/173 (53.76%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFF------DSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEI---------------NDMGES------VWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAK 555
            ++P    F++ F+ + +  YI   +        ++F++ F+V +LL A DFW +KN+SGR+LVGLRWWNE                  +GES      VW FE  D      +N  DS +FW  LY   VAW+VLG+ ++++ Q  YLL + V  +LS+ N + FTKC K  K
Sbjct:   72 SHPIALLFYIFFRVSPIVTYIFGTIVIHQFTSKNTFILHFIVLILLVAGDFWNLKNISGRLLVGLRWWNETTLIESENGNGNGNASGQVGESAKDFENVWVFETADPNRY--INPIDSKVFWLLLYGQPVAWVVLGVLAVLKLQFLYLLFIIVATSLSMTNAMAFTKCDKFGK 242          
The following BLAST results are available for this feature:
BLAST of FC930083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
TVP23_ASPFC5.222e-2635.33Golgi apparatus membrane protein tvp23 OS=Aspergil... [more]
TVP23_PICST6.821e-2639.24Golgi apparatus membrane protein TVP23 OS=Pichia s... [more]
FA18B_DICDI1.519e-2537.34Uncharacterized FAM18-like protein 2 OS=Dictyostel... [more]
YC2L_CAEEL1.985e-2534.64Uncharacterized FAM18-like protein C34D4.4 OS=Caen... [more]
TVP23_NEUCR2.592e-2536.65Golgi apparatus membrane protein tvp-23 OS=Neurosp... [more]
TVP23_BOTFB1.286e-2436.77Golgi apparatus membrane protein tvp23 OS=Botryoti... [more]
TVP23_PODAN1.680e-2438.19Golgi apparatus membrane protein TVP23 OS=Podospor... [more]
TVP23_ASPCL2.194e-2434.73Golgi apparatus membrane protein tvp23 OS=Aspergil... [more]
FA18A_HUMAN2.866e-2437.65Protein FAM18A OS=Homo sapiens GN=FAM18A PE=2 SV=3[more]
TVP23_CANAL4.888e-2436.42Golgi apparatus membrane protein TVP23 OS=Candida ... [more]

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Properties
Property NameValue
Genbank descriptionC34003F03EF PostHarvC1 Citrus clementina cDNA clone C34003F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930083 ID=FC930083; Name=FC930083; organism=Citrus clementina; type=EST; length=685bp
GCCGAGAAATATTTCGCCTGAAAATTTCTCGACTCTCAAAATTAAACCCC
AACAAGATTTAAATTGCGAAAATAGATTCGCGTAATGGATCTCAATCAGC
CTCCTGGTGAAAATTATGCGAACCCAAAGACATGCTTCTTTCATGTTCTC
TTCAAGGGTGCAGCTTTGGCATTTTACATACTTTCTGCCCTCTTTTTCGA
CAGCTTTGTCATCATTTTTGTGGTGACTGTCCTTCTTGCTGCTCTTGATT
TTTGGGTAGTCAAGAATGTTAGTGGGCGTATATTAGTTGGTTTGAGGTGG
TGGAATGAAATAAATGATATGGGTGAGAGTGTGTGGAAGTTTGAGTGCCT
TGACCATGAGTCCATGGCTCGCATGAACAAGAAAGATTCGTGGCTATTCT
GGTGGACCCTTTACCTTTCGGCTGTTGCTTGGATTGTGCTTGGGATATTT
TCTCTCATTAGGTTCCAAGCTGATTATCTCCTGGTTGTTGGTGTCTGTTT
GACCCTCAGCATTGCAAACATTATTGGTTTTACCAAATGCCGAAAAGATG
CTAAGAAGCAGATCCAACAATTTGCCTCCCAGACCATCGCATCCGGATTC
ACATCTACCCTACAGTCAGCTTTCAGTGTTGTCTGATTCAGTTAGAGAAG
CTGGGTGTAAGGTGGACCAGTAAACTTGCTCGTGG
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