FC930083

Overview
NameFC930083
Unique NameFC930083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_VANPO (Golgi apparatus membrane protein TVP23 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TVP23 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 57/144 (39.58%), Postives = 79/144 (54.86%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFECLDHESMA-RMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRK 546
            ++P     H+  K   L FY+L +LF   F   F+  VLL A DF++ KN+SGR LV LRWW +      S + FE     S    +N  DS LFWW++YL+ + WIV GI  ++R +  Y L+V V + L+  N  GF  C K
Sbjct:   15 SHPFLLSIHLGGKAVPLIFYVLGSLFM-GFTAQFISVVLLLAFDFYITKNISGRKLVQLRWWYDTTGKQSSSFTFESYKQFSPGPSINPIDSKLFWWSIYLTPIVWIVFGIMCILRLKLFYFLLVSVGICLTGINAYGFRSCDK 157          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_MAGGR (Golgi apparatus membrane protein TVP23 OS=Magnaporthe grisea GN=TVP23 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.058e-21
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 1
Query:  202 SFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIN-DMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASG 597
            + V+IF++T+LL A DF+ +KN++GR LVGLRWWNE++   G+S W FE         +N  DS  FW  +Y   + WI L + +L+R +  +L +V + L L+I N + F++C  D   Q    A    ++G
Sbjct:   34 NMVMIFIITILLLAADFYYLKNIAGRRLVGLRWWNEVDPQSGDSHWVFES-SEPGTKTVNPTDSRFFWLAIYAQPLLWIGLAVLALVRLKFIWLPLVAIALVLTITNSLAFSRC--DKFSQASNLAGSAFSTG 163          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_CANGA (Golgi apparatus membrane protein TVP23 OS=Candida glabrata GN=TVP23 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.058e-21
Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFEC-LDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKC 540
            ++P    FH+  K A LAFYI   LF  SF  +F+  VLL A DF+  KN+SGR LV LRWW + +      + FE    + +   +N  DS LFWW++YL+   W VLGI +++R +    +++ V   ++  N  GF  C
Sbjct:   15 SHPLLMAFHLAGKAAPLAFYIAGFLF-PSFTALFITIVLLLAADFYFTKNISGRRLVQLRWWYDSSATSTETFTFESHKQYTAGPPINPIDSKLFWWSMYLTPAIWFVLGILAILRLKLITFILIAVATCMTGWNTYGFRCC 155          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: F18B2_HUMAN (Protein FAM18B2 OS=Homo sapiens GN=FAM18B2 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 47/131 (35.88%), Postives = 73/131 (55.73%), Query Frame = 1
Query:   94 NQPPGENYANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFECLDHESMAR--MNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYL 480
            N+P      +P   FFH+ F+ +A+   +L  L   SF+   V  +LL + DFW VKNV+GR++VGLRWWN I++ G+S W FE     S     +++ +S +FW  L   +V W++    +L  F   +L
Sbjct:   24 NRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSSFITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACSVLWVIFAFSALFSFTVKWL 154          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_YEAST (Golgi apparatus membrane protein TVP23 OS=Saccharomyces cerevisiae GN=TVP23 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 51/143 (35.66%), Postives = 82/143 (57.34%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMG-ESVWKFECLDHESMAR-MNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKC 540
            ++P    FH+  K   + FYI+ ++F + F   F+  VLL + DF++ KN++GR LV LRWW +  D+  +S + FE     +    +N  DS LFWW++Y++ V W V  +  L+R +  YL++V V + L+  N  GF  C
Sbjct:   15 SHPLLLSFHLAGKAVPIVFYIIGSMFLN-FTPQFITVVLLLSFDFYLTKNITGRKLVQLRWWYDSTDVNKDSNFTFESYKQYAPGPPINAIDSKLFWWSMYVTPVIWGVFAVLCLLRLKIFYLILVIVAMCLTAWNTYGFRCC 156          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_YEAS7 (Golgi apparatus membrane protein TVP23 OS=Saccharomyces cerevisiae (strain YJM789) GN=TVP23 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 51/143 (35.66%), Postives = 82/143 (57.34%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMG-ESVWKFECLDHESMAR-MNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKC 540
            ++P    FH+  K   + FYI+ ++F + F   F+  VLL + DF++ KN++GR LV LRWW +  D+  +S + FE     +    +N  DS LFWW++Y++ V W V  +  L+R +  YL++V V + L+  N  GF  C
Sbjct:   15 SHPLLLSFHLAGKAVPIVFYIIGSMFLN-FTPQFITVVLLLSFDFYLTKNITGRKLVQLRWWYDSTDVNKDSNFTFESYKQYAPGPPINAIDSKLFWWSMYVTPVIWGVFAVLCLLRLKIFYLILVIVAMCLTAWNTYGFRCC 156          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_KLULA (Golgi apparatus membrane protein TVP23 OS=Kluyveromyces lactis GN=TVP23 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 46/144 (31.94%), Postives = 78/144 (54.17%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFECLDH---ESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKC 540
            ++P     H+L K   + FY+L + F  S  + F++ +L  A DF+  KN++GR L+  RWW +++    + ++FE        + A +N  DS LFW +LY++   W+V G   LI+FQ  YL++V     L++ N   +  C
Sbjct:   15 SHPLILTIHLLGKAVPIVFYLLGSWFLSS-TVQFIIVILTLAADFYFTKNINGRKLIQQRWWYDVSGEDTTTFRFESFKEYPDVAAAPINPIDSKLFWLSLYVAPTIWVVFGFLCLIKFQFVYLILVIFAGGLNLWNAYAYRLC 157          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_ASHGO (Golgi apparatus membrane protein TVP23 OS=Ashbya gossypii GN=TVP23 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.417e-15
Identity = 49/147 (33.33%), Postives = 73/147 (49.66%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGE--SVWKFECL----DHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKC 540
            ++P     H+  K   +AFY+L   F        ++T+LL A+DF++ KN+SGR LV LRWW+      E  S + FE      D+   A +N  DS LFW + Y +   W + G+  ++R Q   L +V     L+  N  GF  C
Sbjct:   15 SHPLVLSLHLAGKAIPVAFYLLGGWFVSYTSHFLIITILLLAVDFYLTKNISGRKLVHLRWWHNATGTNEDGSPFVFESYKQYPDYSGPA-VNPIDSKLFWISTYAAPALWALFGVLCVLRLQFISLFLVLFAAGLTGYNAYGFRSC 160          
The following BLAST results are available for this feature:
BLAST of FC930083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
TVP23_VANPO2.054e-2239.58Golgi apparatus membrane protein TVP23 OS=Vanderwa... [more]
TVP23_MAGGR5.058e-2137.59Golgi apparatus membrane protein TVP23 OS=Magnapor... [more]
TVP23_CANGA5.058e-2138.03Golgi apparatus membrane protein TVP23 OS=Candida ... [more]
F18B2_HUMAN1.127e-2035.88Protein FAM18B2 OS=Homo sapiens GN=FAM18B2 PE=1 SV... [more]
TVP23_YEAST1.627e-1935.66Golgi apparatus membrane protein TVP23 OS=Saccharo... [more]
TVP23_YEAS71.627e-1935.66Golgi apparatus membrane protein TVP23 OS=Saccharo... [more]
TVP23_KLULA8.929e-1831.94Golgi apparatus membrane protein TVP23 OS=Kluyvero... [more]
TVP23_ASHGO5.417e-1533.33Golgi apparatus membrane protein TVP23 OS=Ashbya g... [more]

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Properties
Property NameValue
Genbank descriptionC34003F03EF PostHarvC1 Citrus clementina cDNA clone C34003F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930083 ID=FC930083; Name=FC930083; organism=Citrus clementina; type=EST; length=685bp
GCCGAGAAATATTTCGCCTGAAAATTTCTCGACTCTCAAAATTAAACCCC
AACAAGATTTAAATTGCGAAAATAGATTCGCGTAATGGATCTCAATCAGC
CTCCTGGTGAAAATTATGCGAACCCAAAGACATGCTTCTTTCATGTTCTC
TTCAAGGGTGCAGCTTTGGCATTTTACATACTTTCTGCCCTCTTTTTCGA
CAGCTTTGTCATCATTTTTGTGGTGACTGTCCTTCTTGCTGCTCTTGATT
TTTGGGTAGTCAAGAATGTTAGTGGGCGTATATTAGTTGGTTTGAGGTGG
TGGAATGAAATAAATGATATGGGTGAGAGTGTGTGGAAGTTTGAGTGCCT
TGACCATGAGTCCATGGCTCGCATGAACAAGAAAGATTCGTGGCTATTCT
GGTGGACCCTTTACCTTTCGGCTGTTGCTTGGATTGTGCTTGGGATATTT
TCTCTCATTAGGTTCCAAGCTGATTATCTCCTGGTTGTTGGTGTCTGTTT
GACCCTCAGCATTGCAAACATTATTGGTTTTACCAAATGCCGAAAAGATG
CTAAGAAGCAGATCCAACAATTTGCCTCCCAGACCATCGCATCCGGATTC
ACATCTACCCTACAGTCAGCTTTCAGTGTTGTCTGATTCAGTTAGAGAAG
CTGGGTGTAAGGTGGACCAGTAAACTTGCTCGTGG
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