FC930086

Overview
NameFC930086
Unique NameFC930086
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25
Identity = 72/212 (33.96%), Postives = 105/212 (49.53%), Query Frame = 1
Query:   25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLN-NPLGRVITLTVTLTL-GWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH--THPSLPHYHSSEWDW 648
            ++L W +Y  +QG +   ++V+ H+CGH +FSD   L+  VG ILHS +LVPY  W+ SH  HH N G +++DE +VP  +        Y N + + R+I  TV   L  +P+YL     G+       HF+PY  ++   ER  I IS      M   L  L      + V  +YG P  +   +L  +T L H   H  LP Y   EW +
Sbjct:   77 NWLLWLIYCPIQGTMFWALFVLGHDCGHGSFSDSPLLNSLVGHILHSSILVPYHGWRISHRTHHQNHGHIEKDESWVPLTEKI------YKNLDSMTRLIRFTVPFPLFVYPIYLFSRSPGKE----GSHFNPYSNLFPPSERKGIAISTLCWATMFSLLIYLSFITSPLLVLKLYGIPYWIFVMWLDFVTYLHHHGHHQKLPWYRGKEWSY 278          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25
Identity = 67/211 (31.75%), Postives = 104/211 (49.29%), Query Frame = 1
Query:   25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTL-TLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH--THPSLPHYHSSEWDW 648
            ++L WP+YWA QG +   ++V+ H+CGH +FS+   L+  VG +LHS +LVPY  W+ SH  HH + G  + DE + P  +           + + R++  T     L +P+YL     G+       HFDP   ++   ER  +  S A   AM+  L  L    G + +  +YG P ++   +L L+T L H      LP Y   EW +
Sbjct:  148 NWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHPLPEKLFRSL-----DTVTRMLRFTAPFPLLAFPVYLFSRSPGKT----GSHFDPSSDLFVPNERKDVITSTACWAAMLGLLVGLGFVMGPIQLLKLYGVPYVIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSY 349          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.354e-25
Identity = 69/213 (32.39%), Postives = 108/213 (50.70%), Query Frame = 1
Query:   25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLN-NPLGRVITLTVTLTL-GWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH---THPSLPHYHSSEWDW 648
            S+  WP+YW  QG +   ++V+ H+CGH +FS+   L+  VG ILHS +LVPY  W+ SH  HH N G +++DE +VP  +        Y N + + R++  +    +  +P YL     G+       HF+PY  ++S  ER  +  S      ++  L  L    G +++  +YG P L+   +L  +T L H   TH  LP Y   EW +
Sbjct:   74 SWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHHQNHGHVEKDESWVPLTEKV------YKNLDDMTRMLRYSFPFPIFAYPFYLWNRSPGKE----GSHFNPYSNLFSPGERKGVVTSTLCWGIVLSVLLYLSLTIGPIFMLKLYGVPYLIFVMWLDFVTYLHHHGYTH-KLPWYRGQEWSY 275          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.244e-25
Identity = 67/211 (31.75%), Postives = 102/211 (48.34%), Query Frame = 1
Query:   25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLT-LGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH--THPSLPHYHSSEWDW 648
            +++ WP+YW  QG +   ++V+ H+CGH +FS+   L+  VG +LHS +LVPY  W+ SH  HH N G ++ DE + P  +         L+ P  R    T+ L  L +P YL     G+       H+ P   ++  +ER  +  S A   AM   L CL    G + +  +YG P  +   +L  +T L H      LP Y   EW +
Sbjct:  140 NWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIY----NTLDKPT-RFFRFTLPLVMLAYPFYLWARSPGKK----GSHYHPDSDLFLPKERKDVLTSTACWTAMAALLVCLNFTIGPIQMLKLYGIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSY 341          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.848e-25
Identity = 69/211 (32.70%), Postives = 105/211 (49.76%), Query Frame = 1
Query:   25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWP-LYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH--THPSLPHYHSSEWDW 648
            +++AWP+YW  QG +   ++V+ H+CGH +FS+   L+  VG +LHS +LVPY  W+ SH  HH N G ++ DE + P  +       K L+N     +T T+  +L +P L   F +  R   +   HF P   ++  +ER  I  S A   AM   L  L  + G V +  +YG P  +   +L  +T L H      LP Y    W +
Sbjct:  154 NWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIF----KSLDN-----VTKTLRFSLPFPMLAYPFYLWSRSPGKKGSHFHPDSGLFVPKERKDIITSTACWTAMAALLVYLNFSMGPVQMLKLYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKAWSY 355          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.944e-25
Identity = 68/211 (32.23%), Postives = 102/211 (48.34%), Query Frame = 1
Query:   25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLT-LGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH--THPSLPHYHSSEWDW 648
            ++L WP+YW  QG +   ++V+ H+CGH +FS+   L+  VG +LHS +LVPY  W+ SH  HH N G ++ DE + P  +       K L+ P  R    T+ L  L +P YL     G+       H+ P   ++  +ER  +  S A   AM   L CL    G + +  +Y  P  +   +L  +T L H      LP Y   EW +
Sbjct:   98 NWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIY----KSLDKPT-RFFRFTLPLVMLAYPFYLWARSPGKK----GSHYHPDSDLFLPKERNDVLTSTACWTAMAVLLVCLNFVMGPMQMLKLYVIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSY 299          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.687e-23
Identity = 64/211 (30.33%), Postives = 99/211 (46.92%), Query Frame = 1
Query:   25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWP-LYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH--THPSLPHYHSSEWDW 648
            ++L WP+YW  QG +   ++V+ H+CGH +FS+   L+   G +LHS +LVPY  W+ SH  HH N G ++ DE + P  ++      K          T     TL +P L   F +  R   +   H+ P   ++  +E+  +  S A   AM   L CL    G + +  +YG P  +   +L  +T L H      LP Y   EW +
Sbjct:  133 NWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPESIYKNLEK---------TTQMFRFTLPFPMLAYPFYLWNRSPGKQGSHYHPDSDLFLPKEKKDVLTSTACWTAMAALLVCLNFVMGPIQMLKLYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKEWSY 334          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.410e-23
Identity = 68/211 (32.23%), Postives = 102/211 (48.34%), Query Frame = 1
Query:   25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRV-ITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH--THPSLPHYHSSEWDW 648
            +++ WP+YW  Q  +   ++V+ H+CGH +FS+   L+  VG ILHS +LVPY  W+ SH  HH N G ++ DE + P  +       K L+    ++  TL   L L +P+YL     G+       HF P   ++   E+  +  S     AM+  L  L    G V +  +YG P L    +L L+T L H      LP Y   EW +
Sbjct:  144 NWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIY----KNLDTATKKLRFTLPFPL-LAYPIYLWSRSPGKQ----GSHFHPDSDLFVPNEKKDVITSTVCWTAMLALLVGLSFVIGPVQLLKLYGIPYLGNVMWLDLVTYLHHHGHEDKLPWYRGKEWSY 345          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.811e-16
Identity = 58/205 (28.29%), Postives = 96/205 (46.83%), Query Frame = 1
Query:   40 PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISD---AGILAMIY-SLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEW 642
            PV W   G  LTG +V+ H+CGH +FS   W++D VG IL   ++ P+ SW+  H++HH  T  ++ D  + P +K       +Y N   G+ + +T  L  G   ++     G      + HFD     +  ++R Q+  S     G  A+ + ++   +   G V  + I   P LV + ++   TLL HT   +P     +W
Sbjct:   71 PVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFLPIIYPFHSWRIGHNQHHKYTNRMELDNAWQPWRK------EEYQN--AGKFMQVTYDLFRGRAWWI-----GSILHWASIHFD--WTKFEGKQRQQVKFSSLLVIGAAAIAFPTMILTIGVWGFVKFWVI---PWLVFHFWMSTFTLLHHTIADIPFREPEQW 257          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.096e-14
Identity = 52/208 (25.00%), Postives = 93/208 (44.71%), Query Frame = 1
Query:   28 YLAW---PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEW 642
            YL W   P+ W   G  LTG +VV H+CGH +F+  +W++D VG I  + L+ P+ SW+  H  HH +T  ++ D  + P    A        +  + R+    +     W        +G  +     HF        DR ++++ I+   + A I +   L+   G+      +  P LV + ++   T++ HT P +    +++W
Sbjct:   65 YLPWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHHLHTNKIEVDNAWDPWSVEAF-----QASPAIVRLFYRAIRGPFWW--------TGSIFHWSLMHFKLSNFAQRDRNKVKLSIAVVFLFAAI-AFPALIITTGVWGFVKFWLMPWLVYHFWMSTFTIVHHTIPEIRFRPAADW 258          
The following BLAST results are available for this feature:
BLAST of FC930086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FAD3E_SOYBN1.057e-2533.96Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_SOYBN1.057e-2531.75Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3E_PHAAU2.354e-2532.39Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_ARATH5.244e-2531.75Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3C_RICCO6.848e-2532.70Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_BRANA8.944e-2532.23Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3D_ARATH1.687e-2330.33Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_SESIN6.410e-2332.23Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
DESA_SPIPL5.811e-1628.29Fatty acid desaturase OS=Spirulina platensis GN=de... [more]
DESA_SYNY31.096e-1425.00Fatty acid desaturase OS=Synechocystis sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionC34003F06EF PostHarvC1 Citrus clementina cDNA clone C34003F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930086 ID=FC930086; Name=FC930086; organism=Citrus clementina; type=EST; length=650bp
ATTCACCAACTTCCTCACCCTCTCTCTTATCTGGCCTGGCCAGTTTACTG
GGCTCTTCAAGGCTGCATTTTAACTGGAGTTTGGGTTGTAGCTCATGAAT
GTGGCCACCATGCCTTCAGTGACTATCAATGGCTTGACGACACTGTTGGC
CTTATCCTCCACTCTTGCCTCCTTGTCCCCTACTTCTCTTGGAAGTATAG
CCATCACCGCCATCACTCCAATACAGGATCCCTTGATCGTGATGAAGTAT
TTGTCCCCAAGCAAAAAACCGCCATTGGTTGGTATGCCAAGTACCTTAAC
AACCCACTTGGCCGAGTCATAACACTTACTGTCACCCTCACCCTTGGCTG
GCCTTTGTACCTGGCATTCAATGTATCCGGTAGGCCTTATGATAGATTTG
CTTGCCACTTTGATCCTTATGGCCCCATCTACTCAGACCGCGAGAGGCTC
CAAATTTTCATTTCTGATGCTGGAATTTTAGCTATGATTTACAGTCTCTA
CTGTCTTGTAGCAGCAAAAGGACTTGTGTACGTGTTCTGCATCTATGGAG
GACCTTTGCTGGTAGTGAACGGATTTCTCGTTTTGATCACATTGTTGCAG
CACACTCACCCTTCACTGCCACATTACCATTCTTCAGAATGGGACTGGTT
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