FC930086
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25 Identity = 72/212 (33.96%), Postives = 105/212 (49.53%), Query Frame = 1 Query: 25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLN-NPLGRVITLTVTLTL-GWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH--THPSLPHYHSSEWDW 648 ++L W +Y +QG + ++V+ H+CGH +FSD L+ VG ILHS +LVPY W+ SH HH N G +++DE +VP + Y N + + R+I TV L +P+YL G+ HF+PY ++ ER I IS M L L + V +YG P + +L +T L H H LP Y EW + Sbjct: 77 NWLLWLIYCPIQGTMFWALFVLGHDCGHGSFSDSPLLNSLVGHILHSSILVPYHGWRISHRTHHQNHGHIEKDESWVPLTEKI------YKNLDSMTRLIRFTVPFPLFVYPIYLFSRSPGKE----GSHFNPYSNLFPPSERKGIAISTLCWATMFSLLIYLSFITSPLLVLKLYGIPYWIFVMWLDFVTYLHHHGHHQKLPWYRGKEWSY 278
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25 Identity = 67/211 (31.75%), Postives = 104/211 (49.29%), Query Frame = 1 Query: 25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTL-TLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH--THPSLPHYHSSEWDW 648 ++L WP+YWA QG + ++V+ H+CGH +FS+ L+ VG +LHS +LVPY W+ SH HH + G + DE + P + + + R++ T L +P+YL G+ HFDP ++ ER + S A AM+ L L G + + +YG P ++ +L L+T L H LP Y EW + Sbjct: 148 NWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHPLPEKLFRSL-----DTVTRMLRFTAPFPLLAFPVYLFSRSPGKT----GSHFDPSSDLFVPNERKDVITSTACWAAMLGLLVGLGFVMGPIQLLKLYGVPYVIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSY 349
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.354e-25 Identity = 69/213 (32.39%), Postives = 108/213 (50.70%), Query Frame = 1 Query: 25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLN-NPLGRVITLTVTLTL-GWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH---THPSLPHYHSSEWDW 648 S+ WP+YW QG + ++V+ H+CGH +FS+ L+ VG ILHS +LVPY W+ SH HH N G +++DE +VP + Y N + + R++ + + +P YL G+ HF+PY ++S ER + S ++ L L G +++ +YG P L+ +L +T L H TH LP Y EW + Sbjct: 74 SWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHHQNHGHVEKDESWVPLTEKV------YKNLDDMTRMLRYSFPFPIFAYPFYLWNRSPGKE----GSHFNPYSNLFSPGERKGVVTSTLCWGIVLSVLLYLSLTIGPIFMLKLYGVPYLIFVMWLDFVTYLHHHGYTH-KLPWYRGQEWSY 275
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.244e-25 Identity = 67/211 (31.75%), Postives = 102/211 (48.34%), Query Frame = 1 Query: 25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLT-LGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH--THPSLPHYHSSEWDW 648 +++ WP+YW QG + ++V+ H+CGH +FS+ L+ VG +LHS +LVPY W+ SH HH N G ++ DE + P + L+ P R T+ L L +P YL G+ H+ P ++ +ER + S A AM L CL G + + +YG P + +L +T L H LP Y EW + Sbjct: 140 NWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIY----NTLDKPT-RFFRFTLPLVMLAYPFYLWARSPGKK----GSHYHPDSDLFLPKERKDVLTSTACWTAMAALLVCLNFTIGPIQMLKLYGIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSY 341
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.848e-25 Identity = 69/211 (32.70%), Postives = 105/211 (49.76%), Query Frame = 1 Query: 25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWP-LYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH--THPSLPHYHSSEWDW 648 +++AWP+YW QG + ++V+ H+CGH +FS+ L+ VG +LHS +LVPY W+ SH HH N G ++ DE + P + K L+N +T T+ +L +P L F + R + HF P ++ +ER I S A AM L L + G V + +YG P + +L +T L H LP Y W + Sbjct: 154 NWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIF----KSLDN-----VTKTLRFSLPFPMLAYPFYLWSRSPGKKGSHFHPDSGLFVPKERKDIITSTACWTAMAALLVYLNFSMGPVQMLKLYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKAWSY 355
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 8.944e-25 Identity = 68/211 (32.23%), Postives = 102/211 (48.34%), Query Frame = 1 Query: 25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLT-LGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH--THPSLPHYHSSEWDW 648 ++L WP+YW QG + ++V+ H+CGH +FS+ L+ VG +LHS +LVPY W+ SH HH N G ++ DE + P + K L+ P R T+ L L +P YL G+ H+ P ++ +ER + S A AM L CL G + + +Y P + +L +T L H LP Y EW + Sbjct: 98 NWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIY----KSLDKPT-RFFRFTLPLVMLAYPFYLWARSPGKK----GSHYHPDSDLFLPKERNDVLTSTACWTAMAVLLVCLNFVMGPMQMLKLYVIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSY 299
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.687e-23 Identity = 64/211 (30.33%), Postives = 99/211 (46.92%), Query Frame = 1 Query: 25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWP-LYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH--THPSLPHYHSSEWDW 648 ++L WP+YW QG + ++V+ H+CGH +FS+ L+ G +LHS +LVPY W+ SH HH N G ++ DE + P ++ K T TL +P L F + R + H+ P ++ +E+ + S A AM L CL G + + +YG P + +L +T L H LP Y EW + Sbjct: 133 NWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPESIYKNLEK---------TTQMFRFTLPFPMLAYPFYLWNRSPGKQGSHYHPDSDLFLPKEKKDVLTSTACWTAMAALLVCLNFVMGPIQMLKLYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKEWSY 334
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.410e-23 Identity = 68/211 (32.23%), Postives = 102/211 (48.34%), Query Frame = 1 Query: 25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRV-ITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH--THPSLPHYHSSEWDW 648 +++ WP+YW Q + ++V+ H+CGH +FS+ L+ VG ILHS +LVPY W+ SH HH N G ++ DE + P + K L+ ++ TL L L +P+YL G+ HF P ++ E+ + S AM+ L L G V + +YG P L +L L+T L H LP Y EW + Sbjct: 144 NWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIY----KNLDTATKKLRFTLPFPL-LAYPIYLWSRSPGKQ----GSHFHPDSDLFVPNEKKDVITSTVCWTAMLALLVGLSFVIGPVQLLKLYGIPYLGNVMWLDLVTYLHHHGHEDKLPWYRGKEWSY 345
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.811e-16 Identity = 58/205 (28.29%), Postives = 96/205 (46.83%), Query Frame = 1 Query: 40 PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISD---AGILAMIY-SLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEW 642 PV W G LTG +V+ H+CGH +FS W++D VG IL ++ P+ SW+ H++HH T ++ D + P +K +Y N G+ + +T L G ++ G + HFD + ++R Q+ S G A+ + ++ + G V + I P LV + ++ TLL HT +P +W Sbjct: 71 PVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFLPIIYPFHSWRIGHNQHHKYTNRMELDNAWQPWRK------EEYQN--AGKFMQVTYDLFRGRAWWI-----GSILHWASIHFD--WTKFEGKQRQQVKFSSLLVIGAAAIAFPTMILTIGVWGFVKFWVI---PWLVFHFWMSTFTLLHHTIADIPFREPEQW 257
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.096e-14 Identity = 52/208 (25.00%), Postives = 93/208 (44.71%), Query Frame = 1 Query: 28 YLAW---PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEW 642 YL W P+ W G LTG +VV H+CGH +F+ +W++D VG I + L+ P+ SW+ H HH +T ++ D + P A + + R+ + W +G + HF DR ++++ I+ + A I + L+ G+ + P LV + ++ T++ HT P + +++W Sbjct: 65 YLPWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHHLHTNKIEVDNAWDPWSVEAF-----QASPAIVRLFYRAIRGPFWW--------TGSIFHWSLMHFKLSNFAQRDRNKVKLSIAVVFLFAAI-AFPALIITTGVWGFVKFWLMPWLVYHFWMSTFTIVHHTIPEIRFRPAADW 258 The following BLAST results are available for this feature:
BLAST of FC930086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930086 ID=FC930086; Name=FC930086; organism=Citrus clementina; type=EST; length=650bpback to top |