FC930086
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.525e-13 Identity = 50/203 (24.63%), Postives = 88/203 (43.35%), Query Frame = 1 Query: 40 PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILA-MIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWD 645 P+ WA G +TG +V+ H+C H +FS + ++D VG + L+ PY W++ H +HH+ T L D ++P K I + L +++ L + FN+ + E + IS A + A M+ ++ G+V + P L + ++ T++ HT P +P S EW+ Sbjct: 153 PLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFMPLIYPYEPWRFKHDQHHTKTNMLREDTAWLPIMKEDIESSPGLRKALIYAYGPLRTWMSIAHWLKVHFNLKD----------------FRQSEVKRATISLAAVFAFMVIGWPLIIYKTGIVGWIKFWLMPWLGYHFWMSTFTIVHHTAPHIPFKSSKEWN 339
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.525e-13 Identity = 55/203 (27.09%), Postives = 91/203 (44.83%), Query Frame = 1 Query: 40 PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAK-GLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWD 645 P+ W G +TG +V+ H+C H +FS + ++D VG + L+ PY W++ H RHH+ T L D + P W ++ + PL L + G Y F HFD + E ++ IS A + A I + L+ K G++ + P L + ++ T++ HT P +P +S EW+ Sbjct: 147 PLAWVWTGTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFMPLIYPYEPWRFKHDRHHAKTNMLREDTAWHPV------WKDEFESTPL-----LRKAIIYG---YGPFRCWMSIAHWLMWHFDL--KKFRPSEVPRVKISLACVFAFIAIGWPLIIYKTGIMGWIKFWLMPWLGYHFWMSTFTMVHHTAPYIPFKYSEEWN 333
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11 Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 1 Query: 40 PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVP 258 P+ WA G +TG +V+ H+C H +FS + ++D VG + L+ PY W++ H RHH+ T L D + P Sbjct: 153 PLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQP 225 The following BLAST results are available for this feature:
BLAST of FC930086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930086 ID=FC930086; Name=FC930086; organism=Citrus clementina; type=EST; length=650bpback to top |