FC930086

Overview
NameFC930086
Unique NameFC930086
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.525e-13
Identity = 50/203 (24.63%), Postives = 88/203 (43.35%), Query Frame = 1
Query:   40 PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILA-MIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWD 645
            P+ WA  G  +TG +V+ H+C H +FS  + ++D VG +    L+ PY  W++ H +HH+ T  L  D  ++P  K  I          +     L   +++   L + FN+                  +   E  +  IS A + A M+     ++   G+V     +  P L  + ++   T++ HT P +P   S EW+
Sbjct:  153 PLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFMPLIYPYEPWRFKHDQHHTKTNMLREDTAWLPIMKEDIESSPGLRKALIYAYGPLRTWMSIAHWLKVHFNLKD----------------FRQSEVKRATISLAAVFAFMVIGWPLIIYKTGIVGWIKFWLMPWLGYHFWMSTFTIVHHTAPHIPFKSSKEWN 339          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.525e-13
Identity = 55/203 (27.09%), Postives = 91/203 (44.83%), Query Frame = 1
Query:   40 PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAK-GLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWD 645
            P+ W   G  +TG +V+ H+C H +FS  + ++D VG +    L+ PY  W++ H RHH+ T  L  D  + P       W  ++ + PL     L   +  G   Y  F            HFD     +   E  ++ IS A + A I   + L+  K G++     +  P L  + ++   T++ HT P +P  +S EW+
Sbjct:  147 PLAWVWTGTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFMPLIYPYEPWRFKHDRHHAKTNMLREDTAWHPV------WKDEFESTPL-----LRKAIIYG---YGPFRCWMSIAHWLMWHFDL--KKFRPSEVPRVKISLACVFAFIAIGWPLIIYKTGIMGWIKFWLMPWLGYHFWMSTFTMVHHTAPYIPFKYSEEWN 333          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 1
Query:   40 PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVP 258
            P+ WA  G  +TG +V+ H+C H +FS  + ++D VG +    L+ PY  W++ H RHH+ T  L  D  + P
Sbjct:  153 PLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQP 225          
The following BLAST results are available for this feature:
BLAST of FC930086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FAD6C_SPIOL3.525e-1324.63Omega-6 fatty acid desaturase, chloroplastic OS=Sp... [more]
FAD6C_SOYBN3.525e-1327.09Omega-6 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD6C_ARATH9.601e-1136.99Omega-6 fatty acid desaturase, chloroplastic OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionC34003F06EF PostHarvC1 Citrus clementina cDNA clone C34003F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930086 ID=FC930086; Name=FC930086; organism=Citrus clementina; type=EST; length=650bp
ATTCACCAACTTCCTCACCCTCTCTCTTATCTGGCCTGGCCAGTTTACTG
GGCTCTTCAAGGCTGCATTTTAACTGGAGTTTGGGTTGTAGCTCATGAAT
GTGGCCACCATGCCTTCAGTGACTATCAATGGCTTGACGACACTGTTGGC
CTTATCCTCCACTCTTGCCTCCTTGTCCCCTACTTCTCTTGGAAGTATAG
CCATCACCGCCATCACTCCAATACAGGATCCCTTGATCGTGATGAAGTAT
TTGTCCCCAAGCAAAAAACCGCCATTGGTTGGTATGCCAAGTACCTTAAC
AACCCACTTGGCCGAGTCATAACACTTACTGTCACCCTCACCCTTGGCTG
GCCTTTGTACCTGGCATTCAATGTATCCGGTAGGCCTTATGATAGATTTG
CTTGCCACTTTGATCCTTATGGCCCCATCTACTCAGACCGCGAGAGGCTC
CAAATTTTCATTTCTGATGCTGGAATTTTAGCTATGATTTACAGTCTCTA
CTGTCTTGTAGCAGCAAAAGGACTTGTGTACGTGTTCTGCATCTATGGAG
GACCTTTGCTGGTAGTGAACGGATTTCTCGTTTTGATCACATTGTTGCAG
CACACTCACCCTTCACTGCCACATTACCATTCTTCAGAATGGGACTGGTT
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