FC930093

Overview
NameFC930093
Unique NameFC930093
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 64/187 (34.22%), Postives = 90/187 (48.13%), Query Frame = 1
Query:  109 EATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX------NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK------FVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 621
            E T     RA +AEFI+TL+F++    + + +   T   A+ P                             ISGGH+NPAVTFG F+   +SL+R +LY IAQ LG+     L+K      +V  G    A  LS G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   33 ELTQWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYG--GGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAV 216          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 62/181 (34.25%), Postives = 84/181 (46.41%), Query Frame = 1
Query:  133 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALS---SGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGSHILAGGAFDGASM 666
            RA  AEF +TL +VF G GS + +       A  P                      +ISG HVNPAVTF   VG  +SLLR   Y  AQLLG+     +L  VT        AL+   +GV    A   EI +T   V  ++AT  + + G +G++A +A+GF +    L G  + GA M
Sbjct:    9 RAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGAGM 181          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 64/187 (34.22%), Postives = 90/187 (48.13%), Query Frame = 1
Query:  109 EATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX------NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK------FVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 621
            E T     RA +AEFI+TL+F++    + + +   T   A+ P                             ISGGH+NPAVTFG F+   +SL+R +LY IAQ LG+     L+K      +V  G    A  LS G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   34 ELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYG--GGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAV 217          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 58/173 (33.53%), Postives = 83/173 (47.98%), Query Frame = 1
Query:  133 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN---GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVG-SHILA 639
            RA +AEF++  +FVF   GS + F     N                           +ISG H+NPAVT G  +   IS+ R ++Y IAQ +G+ VA  +L  +T+   G +     L+ GV +   +  EI+ T  LV  V AT  D ++  LG  AP+AIG  V   H+LA
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLPGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLA 183          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 58/177 (32.77%), Postives = 87/177 (49.15%), Query Frame = 1
Query:  133 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX------NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG----QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 621
            RA +AEF++TL+F++    + + +   T   A+ P                             ISGGH+NPAVTFG F+   +SL+R +LY  AQ LG+     L+K   +G        A  +S+G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   41 RAVIAEFVATLLFLYITVATVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAICGVALVKGFQSGFYARYGGGANEVSAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 216          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 59/181 (32.60%), Postives = 85/181 (46.96%), Query Frame = 1
Query:  133 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGSHILAGGAFDGASM 666
            RA  AEF  T+ +VF G G+ + +       A  P+                     ++SG H+NPAVTF   +G  +SL R I Y  AQLLG+     +L  VT        AL++   GV    A   EI +T   V  ++AT  + + G LG+++ +AIGF +    L G  + GASM
Sbjct:   11 RAVFAEFFGTMFYVFFGLGASLKW-------AAGPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPAAIRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVS-LAIGFSLTLGHLFGLYYTGASM 183          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 61/181 (33.70%), Postives = 83/181 (45.86%), Query Frame = 1
Query:  133 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGSHILAGGAFDGASM 666
            RA  AEF +TL +VF G G+ + +          P                      +ISG HVNPAVTF   VG  +SLLR   Y  AQLLG+     +L  VT        AL++   GV    A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA M
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRWTP-------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGM 183          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 60/181 (33.15%), Postives = 89/181 (49.17%), Query Frame = 1
Query:  133 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQ---TTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGSHILAGGAFDGASM 666
            RA LAEF++TL+FVF G GS + +       A++P                      ++SG H+NPAVT    VG ++S LR   Y  AQLLG+     +L  +T  +     +  AL +   A  AV  E+ +T  LV  ++A+  + +  +LG+ A ++IGF V    L G  F G SM
Sbjct:   11 RAVLAEFLATLLFVFFGLGSALQW-------ASSPPSVLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGSPA-LSIGFSVTLGHLLGIYFTGCSM 183          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 59/175 (33.71%), Postives = 89/175 (50.86%), Query Frame = 1
Query:  133 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX--NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAF---ALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVG-SHILA 639
            RA +AEF++ ++F+F   GS + F+    +   T +                       +ISG H+NPAVT G  +   IS+LR I+Y IAQ +G+ VA  +L  +T+    ++    AL+ GV +   +  EI+ T  LV  V AT  D ++  LG   P+AIGF V   H+LA
Sbjct:   12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALGHLLA 185          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.677e-16
Identity = 61/187 (32.62%), Postives = 91/187 (48.66%), Query Frame = 1
Query:  109 EATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX------NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK------FVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 621
            E T     RA +AEF++TL+F++    + + +   T   A+ P                             +SGGH+NPAVTFG F+   +SL+R +LY +AQ LG+     L+K      +V  G    A  LS+G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   29 ELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQSAFYVRYG--GGANELSAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 212          
The following BLAST results are available for this feature:
BLAST of FC930093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
PIP24_MAIZE2.997e-1634.22Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
MIP_RAT2.997e-1634.25Lens fiber major intrinsic protein (Fragment) OS=R... [more]
PIP23_MAIZE3.914e-1634.22Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
AQP1_PONAB3.914e-1633.53Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
PIP26_MAIZE5.112e-1632.77Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
MIP_RANPI5.112e-1632.60Lens fiber major intrinsic protein OS=Rana pipiens... [more]
MIP_CANFA5.112e-1633.70Lens fiber major intrinsic protein OS=Canis famili... [more]
AQP2_MOUSE5.112e-1633.15Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
AQP1_BOVIN5.112e-1633.71Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
PIP25_MAIZE6.677e-1632.62Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34003G01EF PostHarvC1 Citrus clementina cDNA clone C34003G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930093 ID=FC930093; Name=FC930093; organism=Citrus clementina; type=EST; length=700bp
GACCAGTACACTTACGTGAACCACGTAGTAATCACACCCCAAAGGTTCAA
TCTTCATCGTTTGATCTCCATCATGCCGATCAGAAACATTGCCGTTGGCC
ATCCCCGTGAGGCGACTCATCCAGATGCCCTAAGGGCAGCCCTAGCAGAG
TTCATCTCAACTCTAATATTTGTCTTTGCCGGTGAAGGCTCGGGCATGGC
CTTCAACAAGCTCACTCACAACGGCGCCAACACCCCCTCCGGCCTCGTCG
CCGCCTCTGTTGCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGC
GCCAACATTTCCGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGCCTT
CGTTGGAGGTAACATCTCCCTTCTACGAGGCATCCTCTACTGGATCGCCC
AGCTTCTTGGATCCACCGTCGCATGCTTGCTTCTTAAGTTCGTTACCAAC
GGCCAGACCACATCTGCTTTTGCTCTCTCATCTGGAGTTGGTGCATGGAA
CGCAGTCGTTTTCGAGATCGTGATGACATTCGGACTAGTGTACACAGTGT
ATGCCACAGCCCTGGACCCAAAGAAGGGAAGCTTGGGGACAATTGCACCA
ATTGCAATTGGTTTCATTGTAGGAAGCCACATCTTGGCGGGCGGGGCGTT
TGATGGAGCTTCAATGACCCAGCAGTGTCATTCGGGCCAGCTTTGGTAGC
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