FC930093

Overview
NameFC930093
Unique NameFC930093
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 56/175 (32.00%), Postives = 84/175 (48.00%), Query Frame = 1
Query:  133 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX----NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTT----SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 621
            RA +AEF++TL+F++    + + +   T   A                              ISGGH+NPAVT G F+   +SL+R +LY +AQ LG+   C  +K   +   T     A  L+ G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   39 RAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 212          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 56/183 (30.60%), Postives = 86/183 (46.99%), Query Frame = 1
Query:  109 EATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX----NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTS----AFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 621
            E T     RA +AEF++TL+F++    + + +   +   A                              ISGGH+NPAVTFG F+   +SL+R +LY +AQ LG+      +K   +    +    A  L+ G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   29 ELTKWSLYRAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSHYVNYGGGANFLADGYNTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 210          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 56/183 (30.60%), Postives = 86/183 (46.99%), Query Frame = 1
Query:  109 EATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX----NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTT----SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 621
            E T     RA +AEF++TL+F++    + + +   +   A                              ISGGH+NPAVTFG F+   +SL+R +LY +AQ LG+      +K   +         A +L+ G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   29 ELTKWSLYRAVIAEFVATLLFLYITVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSYYDRYGGGANSLADGYNTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 210          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13
Identity = 56/175 (32.00%), Postives = 84/175 (48.00%), Query Frame = 1
Query:  133 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX----NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTT----SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 621
            RA +AEF++TL+F++    + + +   +   A                              ISGGH+NPAVTFG F+   +SL R +LY IAQ LG+      +K   +   T     A +L+ G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   39 RAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAICGVGFVKAFQSSYYTRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAV 212          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.621e-13
Identity = 55/182 (30.22%), Postives = 84/182 (46.15%), Query Frame = 1
Query:  130 LRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFA---LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGSHILAGGAFDGASM 666
            L+A  AEF++TLIFVF G  S + +        +                         +SGGH+NPA+T    VG  ISLLR + Y +AQL+G+     +L  +  G      A   L++      AVV E+++TF L   ++++    +   +G+ A ++IG  V    L G  F G SM
Sbjct:   11 LKAVFAEFLATLIFVFFGLASALKW-------PSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPGNARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSM 184          

HSP 2 Score: 20.4014 bits (41), Expect = 1.621e-13
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  666 DPAVSFGPALV 698
            +PA SFGPA+V
Sbjct:  185 NPARSFGPAVV 195          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 56/181 (30.94%), Postives = 87/181 (48.07%), Query Frame = 1
Query:  133 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVG---AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGSHILAGGAFDGASM 666
            +A  AEF++TLIFV  G GS + +    +     P                      +ISGGH+NPAVT        IS+ + + Y IAQ LG+ +   +L  VT         +++  G   A + ++ E+++TF LV+T++A+    +    G+IA +AIGF V    L    + GASM
Sbjct:   36 KAVSAEFLATLIFVLLGVGSTINWGGSENP---LPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASM 212          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 59/175 (33.71%), Postives = 84/175 (48.00%), Query Frame = 1
Query:  133 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKF--------VTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 621
            RA +AEFI+TL+F++    + +     T  G                           ISGGH+NPAVTFG F+   +SL R + Y +AQ LG+     L+K         +  G  T A   S+G     A+  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   36 RAIIAEFIATLLFLYVTVATVIGHKNQT--GPCGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGGGANTVADGYSTG----TALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAV 203          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.552e-13
Identity = 58/182 (31.87%), Postives = 85/182 (46.70%), Query Frame = 1
Query:  130 LRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT--NGQTTSAF-ALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGSHILAGGAFDGASM 666
            L+A  AEF++TLIFVF G GS + +        +                         +SGGH+NPA+T    VG  ISLLR   Y  AQL+G+     +L  V   N +   A  AL++      A+V E+++TF L   ++A+    +   +G+ A ++IG  V    L G  F G SM
Sbjct:   11 LKAVFAEFLATLIFVFFGLGSALKW-------PSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSM 184          

HSP 2 Score: 20.4014 bits (41), Expect = 3.552e-13
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  666 DPAVSFGPALV 698
            +PA SFGPA+V
Sbjct:  185 NPARSFGPAVV 195          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.011e-12
Identity = 54/181 (29.83%), Postives = 86/181 (47.51%), Query Frame = 1
Query:  133 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT--NGQTTSAF-ALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGSHILAGGAFDGASM 666
            +A  AEF++TLIFVF G GS + +        +                         +SGGH+NPA+T    +G  ISLLR + Y  AQL+G+     +L ++   N +   A  AL++      A+V E+++TF L   ++++    +   +G+ A ++IG  V    L G  F G SM
Sbjct:   12 KAVFAEFLATLIFVFFGLGSALKW-------PSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGILYWLAPLNARGNLAVNALNNNTTPGKAMVVELILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSM 184          

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-12
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  666 DPAVSFGPALV 698
            +PA SFGPA+V
Sbjct:  185 NPARSFGPAVV 195          
BLAST of FC930093 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 57/179 (31.84%), Postives = 82/179 (45.81%), Query Frame = 1
Query:  109 EATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN----GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 621
            E T     RA +AEF++T +F++    + M  NK     A                          ISGGH+NPAVTFG F+   +SL R + Y   Q LG+     ++K        G    A A++ G    + +  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V
Sbjct:   46 ELTSWSFYRAGIAEFVATFLFLYISILTVMGVNKSASKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQRGLYMGSGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 221          
The following BLAST results are available for this feature:
BLAST of FC930093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
PIP24_ARATH4.785e-1432.00Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP23_ARATH6.249e-1430.60Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP22_ARATH8.162e-1430.60Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP21_ARATH1.392e-1332.00Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
AQP5_PIG1.621e-1330.22Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
AQP4_MOUSE1.818e-1330.94Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
PIP28_ARATH2.375e-1333.71Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
AQP5_HUMAN3.552e-1331.87Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]
AQP5_RAT1.011e-1229.83Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
PIP13_ORYSJ1.539e-1231.84Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]

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Properties
Property NameValue
Genbank descriptionC34003G01EF PostHarvC1 Citrus clementina cDNA clone C34003G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930093 ID=FC930093; Name=FC930093; organism=Citrus clementina; type=EST; length=700bp
GACCAGTACACTTACGTGAACCACGTAGTAATCACACCCCAAAGGTTCAA
TCTTCATCGTTTGATCTCCATCATGCCGATCAGAAACATTGCCGTTGGCC
ATCCCCGTGAGGCGACTCATCCAGATGCCCTAAGGGCAGCCCTAGCAGAG
TTCATCTCAACTCTAATATTTGTCTTTGCCGGTGAAGGCTCGGGCATGGC
CTTCAACAAGCTCACTCACAACGGCGCCAACACCCCCTCCGGCCTCGTCG
CCGCCTCTGTTGCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGC
GCCAACATTTCCGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGCCTT
CGTTGGAGGTAACATCTCCCTTCTACGAGGCATCCTCTACTGGATCGCCC
AGCTTCTTGGATCCACCGTCGCATGCTTGCTTCTTAAGTTCGTTACCAAC
GGCCAGACCACATCTGCTTTTGCTCTCTCATCTGGAGTTGGTGCATGGAA
CGCAGTCGTTTTCGAGATCGTGATGACATTCGGACTAGTGTACACAGTGT
ATGCCACAGCCCTGGACCCAAAGAAGGGAAGCTTGGGGACAATTGCACCA
ATTGCAATTGGTTTCATTGTAGGAAGCCACATCTTGGCGGGCGGGGCGTT
TGATGGAGCTTCAATGACCCAGCAGTGTCATTCGGGCCAGCTTTGGTAGC
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