FC930117

Overview
NameFC930117
Unique NameFC930117
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D1_BOVIN (V-type proton ATPase subunit d 1 OS=Bos taurus GN=ATP6V0D1 PE=1 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.406e-72
Identity = 127/224 (56.70%), Postives = 169/224 (75.45%), Query Frame = 2
Query:   56 FEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            F  + FN+  GYLE +VRG +AG+L+ ADY NL QCETL+D+K+HL +T+YG +L NE SPL  + I ++   K+V E++HM   A EPL++FL++ITY +MIDNV+L++TGTL +R + EL+ KCHPLG F+ +  + +AQ   ELY  +LVDTPLA +F +CI+ +DLD+MNIEI+RNTLYKAYLE FYKFC  LGG TA+ M  +L FEADRRA   TINS
Sbjct:    4 FPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS 227          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D_SCHPO (V-type proton ATPase subunit d OS=Schizosaccharomyces pombe GN=vma6 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.609e-68
Identity = 120/223 (53.81%), Postives = 172/223 (77.13%), Query Frame = 2
Query:   59 EAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            +A++FN + GY+EA+VRGY + LL    Y+NL QCE+L+D ++ LS+T+YG +L N+ S L ++ I  K T KL+DE+  +  QA E LS F++YITY +MIDN++L++TGT+  +D  +LLE+CHPLG F+++  L VA N+ ELY +VL++TPLAPYF +C++++DLD+ +IEI+RNTLYKAYLEDFY FC+K+G  TA+ M  +L FEADRRA+  TINS
Sbjct:    2 DALSFNTNSGYIEALVRGYESALLEQHIYSNLSQCESLEDFRLQLSSTDYGGFLANQ-SKLTSSIISAKATEKLLDEFDLIRRQADETLSKFMDYITYAYMIDNIMLLLTGTVNGQDTHDLLERCHPLGWFETLPALCVATNVEELYSVVLIETPLAPYFKDCLSADDLDEQHIEIIRNTLYKAYLEDFYNFCKKIGACTADTMLPILEFEADRRAITITINS 223          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D2_XENTR (V-type proton ATPase subunit d 2 OS=Xenopus tropicalis GN=atp6v0d2 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.584e-68
Identity = 117/219 (53.42%), Postives = 162/219 (73.97%), Query Frame = 2
Query:   71 FNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            FN+  GYLE +VRG++ G+L + DY NL QCETL+D+K+HL +T+YG +L NE   L  + I ++   KL+ E+ +    A EPL+TFL++ITY +MIDN++L++TGTL +R + EL+ KCHPLG F+ +  + +AQ   EL+  ++VDTPLA +F +C++  D+D+MNIEIMRN LYK+YLE FYKFC+KLGG T EIM  +L FEADRRA   TINS
Sbjct:    8 FNVDSGYLEGLVRGFKGGILRSTDYLNLAQCETLEDLKLHLQSTDYGSFLANETRQLTVSIIDQRLKDKLMAEFHYFRNHAFEPLATFLDFITYSYMIDNIILLITGTLHQRPISELVPKCHPLGSFEQMEAVNIAQTPAELFNAIIVDTPLADFFQDCLSENDMDEMNIEIMRNKLYKSYLEAFYKFCKKLGGTTEEIMCPILEFEADRRAFVITINS 226          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D_NEUCR (V-type proton ATPase subunit d OS=Neurospora crassa GN=vma-6 PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.722e-66
Identity = 119/227 (52.42%), Postives = 164/227 (72.25%), Query Frame = 2
Query:   59 EAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFC----QKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            E + FN++ GY+E IVRGYR  LLT+ +Y N+ QCE++DD+K+ L    YG +L + P    T+ +  K T KLV E++++   A   L+ F++Y+TYG+MIDNV L++TGTL ERD +ELLE+CHPLG F+++  L VA N+ ELY  V+++TPLAPYF   ++ +DLD++NIEI+RNTLYK YLEDFY F        G  TAE+MS+LL FEADRRA+N T+NS
Sbjct:    2 EGLLFNVNNGYIEGIVRGYRNSLLTSTNYTNMTQCESIDDLKLQLGPA-YGDFLASLPPKPSTSALAAKTTDKLVSEFRYVRANAAGSLAKFMDYLTYGYMIDNVALLITGTLHERDTRELLERCHPLGWFETMPVLCVATNIEELYNSVMIETPLAPYFKSSLSLQDLDELNIEIVRNTLYKNYLEDFYHFVNTHPDMAGTPTAEVMSELLEFEADRRAINITLNS 227          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D_YEAST (V-type proton ATPase subunit d OS=Saccharomyces cerevisiae GN=VMA6 PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.838e-62
Identity = 116/226 (51.33%), Postives = 164/226 (72.57%), Query Frame = 2
Query:   59 EAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEK-CTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECI-TSEDLDDMNIEIMRNTLYKAYLEDFYKF-CQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            E + FNI  G++E +VRGYR GLL+   Y NL QC+TL+D+K+ LS+T+YG +L +  S   TT+++++  + KL  E+ ++  Q++     F++YITYG+MIDNV L++TGT+ +RD  E+L++CHPLG FD++ TL+VA ++  LY  VLVDTPLAPYF  C  T+E+LDDMNIEI+RN LYKAYLEDFY F  +++     E M  LL FEADRR++N  +NS
Sbjct:    2 EGVYFNIDNGFIEGVVRGYRNGLLSNNQYINLTQCDTLEDLKLQLSSTDYGNFLSSVSSESLTTSLIQEYASSKLYHEFNYIRDQSSGSTRKFMDYITYGYMIDNVALMITGTIHDRDKGEILQRCHPLGWFDTLPTLSVATDLESLYETVLVDTPLAPYFKNCFDTAEELDDMNIEIIRNKLYKAYLEDFYNFVTEEIPEPAKECMQTLLGFEADRRSINIALNS 227          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D2_MOUSE (V-type proton ATPase subunit d 2 OS=Mus musculus GN=Atp6v0d2 PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.458e-61
Identity = 109/219 (49.77%), Postives = 157/219 (71.69%), Query Frame = 2
Query:   71 FNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            FN+  GYLE +VRG +A LLT  DY NL QCETL+D+K+HL  T+YG +L NE +PL  + I  +   KL  E+ +    + EPLSTFL Y+T  +MIDN++L++ G L+++ V+E+L KCHPLG F  +  + +A+   +L++ VLV+TPLAP+F +C++   LD++NIE++RN LYK+YLE FYKFC+  G  TA++M  +L FEADRRA+  T+NS
Sbjct:    9 FNVDHGYLEGLVRGCKASLLTQQDYVNLVQCETLEDLKIHLQTTDYGNFLANETNPLTVSKIDTEMRKKLCREFDYFRNHSLEPLSTFLTYMTCSYMIDNIILLMNGALQKKSVKEVLAKCHPLGRFTEMEAVNIAETPSDLFKAVLVETPLAPFFQDCMSENTLDELNIELLRNKLYKSYLEAFYKFCKDHGDVTADVMCPILEFEADRRALIITLNS 227          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D2_RAT (V-type proton ATPase subunit d 2 OS=Rattus norvegicus GN=Atp6v0d2 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.905e-61
Identity = 109/219 (49.77%), Postives = 157/219 (71.69%), Query Frame = 2
Query:   71 FNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            FN+  GYLE +VRG +A LLT  DY NL QCETL+D+K+HL  T+YG +L +E +PL  + I  +   KL  E+ +    + EPLSTF  Y+T  +MIDN++L++ G L+++ V+E+L KCHPLG F  +  + +A++  EL++ VLV+TPLAP+F +C++   LD++NIE++RN LYK+YLE FYKFC+  G  TAE+M  +L FEADRRA+  T+NS
Sbjct:    9 FNVDHGYLEGLVRGCKASLLTQQDYVNLVQCETLEDLKIHLQTTDYGNFLAHETNPLTVSKIDTEMRKKLCREFDYFRNHSLEPLSTFFTYMTCSYMIDNIILLMNGALQKKSVKEVLAKCHPLGRFTEMEAVNIAESASELFKAVLVETPLAPFFQDCMSENTLDELNIELLRNKLYKSYLEAFYKFCKDHGDVTAEVMCPILEFEADRRALIITLNS 227          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D2_HUMAN (V-type proton ATPase subunit d 2 OS=Homo sapiens GN=ATP6V0D2 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.453e-61
Identity = 107/219 (48.86%), Postives = 155/219 (70.78%), Query Frame = 2
Query:   71 FNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            FN+  GYLE +VRG +A LLT  DY NL QCETL+D+K+HL  T+YG +L N  +PL  + I  +   +L  E+++    + EPLSTFL Y+T  +MIDNV+L++ G L+++ V+E+L KCHPLG F  +  + +A+   +L+  +L++TPLAP+F +C++   LD++NIE++RN LYK+YLE FYKFC+  G  TAE+M  +L FEADRRA   T+NS
Sbjct:    9 FNVDHGYLEGLVRGCKASLLTQQDYINLVQCETLEDLKIHLQTTDYGNFLANHTNPLTVSKIDTEMRKRLCGEFEYFRNHSLEPLSTFLTYMTCSYMIDNVILLMNGALQKKSVKEILGKCHPLGRFTEMEAVNIAETPSDLFNAILIETPLAPFFQDCMSENALDELNIELLRNKLYKSYLEAFYKFCKNHGDVTAEVMCPILEFEADRRAFIITLNS 227          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D2_BOVIN (V-type proton ATPase subunit d 2 OS=Bos taurus GN=ATP6V0D2 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.003e-60
Identity = 107/221 (48.42%), Postives = 153/221 (69.23%), Query Frame = 2
Query:   65 MTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            + FN   GYLE +VRG +AGLLT  DY NL QCE L+D+K+HL  T+YG +L N+ +PL  + I  +   KL  E+++    + EPLSTF  Y+T  +MIDNV+L++ G L+ + V+++L KCHPLG F  +  + +A+   +L+  +LV+TPLAP+F +C +   LD++NIEI+RN LYK+Y+E FYKFC+  G  TAE+M  +L FEADRRA   T+NS
Sbjct:    7 LNFNADHGYLEGLVRGCKAGLLTRRDYVNLVQCENLEDLKIHLQTTDYGNFLANQATPLTVSVIDTEMRKKLCREFEYFRNHSLEPLSTFFTYMTCSYMIDNVILLMNGALQNKPVKDVLVKCHPLGHFTEMEAVNIAETPSDLFNAILVETPLAPFFQDCTSENALDELNIEILRNKLYKSYIEAFYKFCKNHGDVTAEVMCPILEFEADRRAFIITLNS 227          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D2_PONAB (V-type proton ATPase subunit d 2 OS=Pongo abelii GN=ATP6V0D2 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.365e-59
Identity = 105/219 (47.95%), Postives = 155/219 (70.78%), Query Frame = 2
Query:   71 FNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            FN+  GYLE +VRG +A LLT  DY NL QCETL+D+K+HL  T+YG +L N+ +PL  + I  +   +L  E+++    + EPLSTFL Y+T  +MIDNV+ ++ G L+++ V+E+L KCHPLG F  +  + +A+   +L+  +L++TPLAP+F +C++   L+++NIE++RN LYK+YLE FYKFC+  G  TAE+M  +L FEADRRA   T+NS
Sbjct:    9 FNVDHGYLEGLVRGCKASLLTQQDYINLVQCETLEDLKIHLQTTDYGNFLANQTNPLTVSKIDTEMRKRLCGEFEYFRNHSLEPLSTFLTYMTCSYMIDNVIPLMNGALQKKSVKEILGKCHPLGRFTEMEAVNIAETPSDLFNAILIETPLAPFFQDCMSENALNELNIELLRNKLYKSYLEAFYKFCKNHGDVTAEVMCPILEFEADRRAFIITLNS 227          
The following BLAST results are available for this feature:
BLAST of FC930117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
VA0D1_BOVIN1.406e-7256.70V-type proton ATPase subunit d 1 OS=Bos taurus GN=... [more]
VA0D_SCHPO1.609e-6853.81V-type proton ATPase subunit d OS=Schizosaccharomy... [more]
VA0D2_XENTR3.584e-6853.42V-type proton ATPase subunit d 2 OS=Xenopus tropic... [more]
VA0D_NEUCR5.722e-6652.42V-type proton ATPase subunit d OS=Neurospora crass... [more]
VA0D_YEAST3.838e-6251.33V-type proton ATPase subunit d OS=Saccharomyces ce... [more]
VA0D2_MOUSE1.458e-6149.77V-type proton ATPase subunit d 2 OS=Mus musculus G... [more]
VA0D2_RAT1.905e-6149.77V-type proton ATPase subunit d 2 OS=Rattus norvegi... [more]
VA0D2_HUMAN9.453e-6148.86V-type proton ATPase subunit d 2 OS=Homo sapiens G... [more]
VA0D2_BOVIN8.003e-6048.42V-type proton ATPase subunit d 2 OS=Bos taurus GN=... [more]
VA0D2_PONAB1.365e-5947.95V-type proton ATPase subunit d 2 OS=Pongo abelii G... [more]

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Properties
Property NameValue
Genbank descriptionC34004A01EF PostHarvC1 Citrus clementina cDNA clone C34004A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930117 ID=FC930117; Name=FC930117; organism=Citrus clementina; type=EST; length=729bp
GACATCACAACGAACAAACAATCGCACCGCTCTCTCATTCGCGAAGATGT
ACGGGTTCGAAGCGATGACGTTTAACATACACGGCGGATACTTGGAGGCG
ATCGTGAGGGGCTACCGTGCGGGGCTCTTGACGGCCGCCGATTACAACAA
TTTGTGCCAGTGCGAAACACTTGACGACATCAAGATGCACCTCTCCGCCA
CCGAATATGGTCCTTACCTCCAAAACGAACCTTCCCCATTGCATACTACA
ACAATTGTGGAGAAATGCACTCTGAAACTGGTTGATGAGTATAAGCACAT
GCTGTGCCAAGCCACTGAGCCCCTGTCAACATTTTTAGAGTATATCACAT
ATGGTCACATGATAGACAATGTTGTCTTGATTGTTACTGGAACCTTGCGT
GAGAGAGATGTTCAAGAACTGTTGGAGAAATGTCACCCTTTGGGCATGTT
TGACAGCATTGCTACACTGGCGGTTGCTCAGAACATGCGGGAGCTTTATA
GATTGGTGCTTGTTGACACACCATTAGCACCATACTTTTCTGAATGTATC
ACATCAGAGGACTTGGATGACATGAACATTGAAATAATGAGGAATACTCT
CTACAAGGCATACCTAGAAGACTTTTACAAGTTTTGTCAGAAACTGGGTG
GTGCAACAGCTGAGATCATGTCTGACCTTCTAGCTTTTGAGGCCGACAGA
AGAGCTGTCAATACCACCATAAACAGCGT
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