FC930117

Overview
NameFC930117
Unique NameFC930117
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D2_DROME (Probable V-type proton ATPase subunit d 2 OS=Drosophila melanogaster GN=CG4624 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.048e-51
Identity = 97/223 (43.50%), Postives = 146/223 (65.47%), Query Frame = 2 
Query:   62 AMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTL-KLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            +M FN   GYLEA+ RG++ G+L  +DY NL QCE+L+D+ + +  T+YG     E S   +  ++E+C   +L+ +Y ++   +TEPL+TF+E+I Y  MIDNV L+V G    R ++ LL  CHPLG FD +  + VA N  EL+  VL+DTP+A +    +  E L  +++EI+R  LY+AYLE FY +C +LGG TA +M++LL+FEADRR +   +N+
Sbjct:    2 SMIFNTEYGYLEALTRGFKNGMLKHSDYLNLTQCESLEDVMISIQGTDYGLIFGGEQSA-PSVEVIERCLRDRLLQQYYYIRSHSTEPLTTFMEFIRYPFMIDNVALLVAGLNNHRSMKRLLRMCHPLGEFDQLGAIEVASNSAELFDAVLIDTPIARFVPRDLPMESLRYLDVEIVRAHLYRAYLEKFYAYCSQLGGNTANVMTNLLSFEADRRTITIAVNA 223
The following BLAST results are available for this feature:
BLAST of FC930117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
VA0D2_DROME3.048e-5143.50Probable V-type proton ATPase subunit d 2 OS=Droso... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34004A01EF PostHarvC1 Citrus clementina cDNA clone C34004A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930117 ID=FC930117; Name=FC930117; organism=Citrus clementina; type=EST; length=729bp
GACATCACAACGAACAAACAATCGCACCGCTCTCTCATTCGCGAAGATGT
ACGGGTTCGAAGCGATGACGTTTAACATACACGGCGGATACTTGGAGGCG
ATCGTGAGGGGCTACCGTGCGGGGCTCTTGACGGCCGCCGATTACAACAA
TTTGTGCCAGTGCGAAACACTTGACGACATCAAGATGCACCTCTCCGCCA
CCGAATATGGTCCTTACCTCCAAAACGAACCTTCCCCATTGCATACTACA
ACAATTGTGGAGAAATGCACTCTGAAACTGGTTGATGAGTATAAGCACAT
GCTGTGCCAAGCCACTGAGCCCCTGTCAACATTTTTAGAGTATATCACAT
ATGGTCACATGATAGACAATGTTGTCTTGATTGTTACTGGAACCTTGCGT
GAGAGAGATGTTCAAGAACTGTTGGAGAAATGTCACCCTTTGGGCATGTT
TGACAGCATTGCTACACTGGCGGTTGCTCAGAACATGCGGGAGCTTTATA
GATTGGTGCTTGTTGACACACCATTAGCACCATACTTTTCTGAATGTATC
ACATCAGAGGACTTGGATGACATGAACATTGAAATAATGAGGAATACTCT
CTACAAGGCATACCTAGAAGACTTTTACAAGTTTTGTCAGAAACTGGGTG
GTGCAACAGCTGAGATCATGTCTGACCTTCTAGCTTTTGAGGCCGACAGA
AGAGCTGTCAATACCACCATAAACAGCGT
back to top