FC930122

Overview
NameFC930122
Unique NameFC930122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930122 vs. ExPASy Swiss-Prot
Match: SCP51_ARATH (Serine carboxypeptidase-like 51 OS=Arabidopsis thaliana GN=SCPL51 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.119e-17
Identity = 55/174 (31.61%), Postives = 91/174 (52.30%), Query Frame = 2
Query:  164 GYVTVNEESGRALFYWFVEA---VEDPDSK-PLVLWLNGGPGCSSIAYGEAEEIGPF--HIKPDGKTLYLNPYSWNQVANILFLDSPVGVGFSY-SNTSSDITANGDKRTAEDSLKFLLKWLERFSQFKGRDFYISGESYGGHYVPQLSKAIIRHNQATGEKAINLKGYMVGNA 664
            GYV V  ++   +F+W  ++   VE+P    P++LWL GGPG S +  G  +E+GP    +KP   T       W + A++LF+DSPVG G+S+      D+    D+  A+D  K L +   +         +I  ESYGG    +L  ++I   Q +G+  ++L G ++G++
Sbjct:   37 GYVEVRPKAH--MFWWHYKSPYRVENPSKPWPIILWLQGGPGASGVGIGNFQEVGPLDTFLKPRNST-------WLKKADLLFVDSPVGAGYSFVEGNQKDLYVKSDEEAAQDLTKLLQQLFNKNQTLNQSPLFIVAESYGGKIAVKLGLSVIDAVQ-SGKLKLHLGGVILGDS 200          
BLAST of FC930122 vs. ExPASy Swiss-Prot
Match: RISC_HUMAN (Retinoid-inducible serine carboxypeptidase OS=Homo sapiens GN=SCPEP1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 64/175 (36.57%), Postives = 86/175 (49.14%), Query Frame = 2
Query:  167 YVTVNEESGRALFYWFVEAV---EDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPF--HIKPDGKTLYLNPYSWNQVANILFLDSPVGVGFSYSNTSSDITANGDKRTAEDSLKFLLKWLERFSQFKGRDFYISGESYGGHYVP----QLSKAIIRHNQATGEKAINLKGYMVGNA 664
            YVTV +++   +F+W   A    ++    PLV+WL GGPG SS  +G  EEIGP    +KP   T       W Q A++LF+D+PVG GFSY N  S   A      A D +  L  +     +F+   FYI  ESYGG        +L KAI R     G    N  G  +G++
Sbjct:   42 YVTVRKDA--YMFWWLYYATNSCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRKTT-------WLQAASLLFVDNPVGTGFSYVN-GSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLELYKAIQR-----GTIKCNFAGVALGDS 201          
The following BLAST results are available for this feature:
BLAST of FC930122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
SCP51_ARATH2.119e-1731.61Serine carboxypeptidase-like 51 OS=Arabidopsis tha... [more]
RISC_HUMAN1.373e-1636.57Retinoid-inducible serine carboxypeptidase OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionC34004A06EF PostHarvC1 Citrus clementina cDNA clone C34004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930122 ID=FC930122; Name=FC930122; organism=Citrus clementina; type=EST; length=712bp
TTATAATCCAAAAGGAGCTTCCTTTCTTGTTCAAATCTTGTTCATTTTCA
TAATTTTTTATCTGGGCAGTGCCTTTTCAACAGACCCAGTTGCCCAGCAA
AAACTTGACAGAGTTGGGAAGCTGCCTGGGCAAAATTTCAATGTCAACTT
TGCCCATTACTCTGGTTATGTCACAGTCAACGAAGAATCCGGGAGGGCTC
TCTTTTATTGGTTCGTTGAAGCTGTTGAAGATCCTGATTCCAAGCCTCTT
GTGCTTTGGCTCAATGGAGGGCCTGGGTGTTCATCCATTGCTTATGGGGA
GGCAGAGGAAATAGGTCCTTTTCACATCAAGCCAGATGGGAAGACCTTAT
ACTTGAATCCTTACTCTTGGAATCAAGTTGCCAACATTCTGTTTCTTGAT
TCCCCCGTTGGCGTTGGTTTTTCATATTCAAATACATCCTCTGATATTAC
GGCCAATGGTGATAAAAGGACTGCGGAGGATTCCCTAAAATTTTTACTAA
AGTGGTTAGAACGGTTTTCACAATTTAAAGGAAGGGATTTCTACATCTCC
GGGGAGAGTTATGGAGGGCATTATGTTCCTCAGTTAAGCAAAGCAATCAT
AAGGCACAACCAAGCAACTGGGGAAAAAGCAATTAATCTGAAGGGCTACA
TGGTGGGAAATGCTCNTACTGATGATTACCATGATTACTTGGGCCTTTTC
CATTTTGGTGGT
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