FC930130

Overview
NameFC930130
Unique NameFC930130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_DROME (Proteasome subunit beta type-4 OS=Drosophila melanogaster GN=Prosbeta7 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.621e-25
Identity = 65/204 (31.86%), Postives = 108/204 (52.94%), Query Frame = 1
Query:  178 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM----------------------------RNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGLGNHLARPILRDEWHENLSYE--DGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYALKNVW 696
            TGTSV+ ++Y  G+++AAD   SYGS  RY+++ER+  + K+ LLG SG+ +D Q + RN+D+ M                            R++ +PL+  +V+GGV N G  YL  V + G ++ED  VATG   HLA P++R++  ++  +   +  +L+  CM VL YRD   +++      +  G  +  P+ +   W
Sbjct:   56 TGTSVLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILLGGSGDFADIQSIKRNIDQKMIEDQCCDDNIEMKPKSLASWMTRVLYNRRSRMNPLYIDVVVGGVDNEGTPYLANVDLRGRSYEDYVVATGFARHLAVPLVREKKPKDRDFTAVEASELIRTCMEVLYYRDTRNISQYTVGVCSVNGCGVEGPFQVNENW 259          
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_PIG (Proteasome subunit beta type-4 (Fragment) OS=Sus scrofa GN=PSMB4 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 36/75 (48.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:  148 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM 372
            PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L +++
Sbjct:   42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMV 116          
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 53/183 (28.96%), Postives = 83/183 (45.36%), Query Frame = 1
Query:  181 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL-------DELMRNKFDPLWNSLVLGGVKNGQKY-----------------LGMVSMIGVNFEDSHVATGLGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEG 657
            GT+ V L  K+G+++AAD   S G+ I  K+V +I  I +H  +  +G++ D   L+R L          +  +      + +L  + NG KY                 L  V M+G   ED++ A G G   A  IL  E+ E +S  DG+KL  K + V + RD    +      IT++G
Sbjct:   10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEKPRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAIKRDVFTGDGLLVVTITKDG 192          
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 51/183 (27.87%), Postives = 83/183 (45.36%), Query Frame = 1
Query:  181 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELMRNKFDPLWNSL-------VLGGVKNGQKY-----------------LGMVSMIGVNFEDSHVATGLGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEG 657
            GT+ V +  KDG+++AAD   S G+ I  ++V +I  I +H  +  +G++ D   L+R L    +  +      +       +L  + NG KY                 L  V M+G   ED +   G G   A  IL  E+ +NL+ E+G+KL  K +   + RD  + +      IT+EG
Sbjct:   10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDEKPKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGDGILVVTITKEG 192          
The following BLAST results are available for this feature:
BLAST of FC930130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PSB4_DROME3.621e-2531.86Proteasome subunit beta type-4 OS=Drosophila melan... [more]
PSB4_PIG4.905e-1448.00Proteasome subunit beta type-4 (Fragment) OS=Sus s... [more]
PSMB_PYRFU9.250e-1328.96Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSMB_PYRHO2.061e-1227.87Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]

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Properties
Property NameValue
Genbank descriptionC34004B03EF PostHarvC1 Citrus clementina cDNA clone C34004B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930130 ID=FC930130; Name=FC930130; organism=Citrus clementina; type=EST; length=710bp
GAAAACACAAGGCTTCTCAGTTCTCAGAAGTTAGATCGTGAAGCCTCAGC
TGATCAGCTTTGCTATTTACTGAGAAAGTGAATCAAATCTCAAAACGAAT
TAATGGAATCGATCCAAGCCAAACAAGGACTTGTCGGCCCTAACGACCCC
ATTCAAAGAACCCAGTTACCATATGTGACTGGTACATCTGTTGTTGCGCT
GAAGTACAAAGATGGCATATTAATGGCTGCTGACATGGGAGGTTCCTATG
GGTCAACAATCCGATACAAGAGTGTGGAACGGATTAAACCTATTGGAAAG
CATTCTCTACTGGGTGCCAGTGGAGAAATAAGTGATTTTCAGGAGCTTTT
GCGTAATCTTGATGAGCTTATGCGTAACAAGTTTGATCCATTGTGGAACT
CTCTTGTGCTTGGTGGAGTGAAAAATGGACAGAAATATCTTGGCATGGTA
TCAATGATAGGAGTGAACTTTGAGGACAGCCATGTTGCAACTGGGTTAGG
GAATCATCTTGCAAGGCCAATTCTTCGTGATGAATGGCATGAAAACTTGA
GTTATGAAGATGGCGTTAAGTTGCTGGAAAAGTGCATGCGTGTGCTCCTG
TATCGTGATAGATCTGCCGTCAACAAAGCTGCAGATAGCAAGATCACTGA
AGAAGGGACAAACATTTCCCAGCCCTACGCATTGAAGAACGTCTGGGGAA
TCACTGCATT
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