FC930136

Overview
NameFC930136
Unique NameFC930136
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930136 vs. ExPASy Swiss-Prot
Match: Y1251_PYRAB (UPF0076 protein PYRAB12510 OS=Pyrococcus abyssi GN=PYRAB12510 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 58/122 (47.54%), Postives = 83/122 (68.03%), Query Frame = 2
Query:  239 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 604
            KE + T KAP  +GPYSQAIK  N +FV+G + + PETG+ V   I++QT++V++NI  IL+ +GA  + VVK T+ L DL DF  +NE+Y++YF    PAR   +V+ LP D  +E+E IA
Sbjct:    3 KEVIFTEKAPKPIGPYSQAIKVGNFIFVAGQIPIDPETGEIVKGDIKEQTKRVIENIKAILEEAGASLNDVVKVTVYLKDLNDFAKMNEVYSEYFGESKPARVAVEVSRLPKDVLIEMEAIA 124          
BLAST of FC930136 vs. ExPASy Swiss-Prot
Match: YABJ_BACSU (UPF0076 protein yabJ OS=Bacillus subtilis GN=yabJ PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.123e-25
Identity = 58/123 (47.15%), Postives = 84/123 (68.29%), Query Frame = 2
Query:  236 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 604
            + +AV T  APAA+GPYSQ I  NN+ + SG + L P +G+ V+  I++QT QV  N+  +L+ +GA + +VVK T+ +AD++ F  VNE+Y +YF +  PAR+  +VA LP DA VEIE IA
Sbjct:    1 MTKAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTP-SGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVIA 122          
BLAST of FC930136 vs. ExPASy Swiss-Prot
Match: DFRA_MYXXA (Protein dfrA OS=Myxococcus xanthus GN=dfrA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25
Identity = 58/124 (46.77%), Postives = 85/124 (68.55%), Query Frame = 2
Query:  239 KEAVVTNKAPAALGPYSQAIK--ANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 604
            ++A+ +++AP A+GPYSQA++  A  + F+SG + L P T + V   +  Q E+V++N+  +L ASG D+S VV+ TI L DL DF  VNE+Y +YF    PARAT QV+ALP  ++VEI+ IA
Sbjct:    6 RKAIHSDQAPKAIGPYSQAVQVDAGKMTFLSGQIPLDPATMEMVQGDVVAQAERVMENLKAVLAASGLDFSHVVRCTIFLTDLGDFARVNEVYGRYFTGAPPARATVQVSALPRGSKVEIDAIA 129          
BLAST of FC930136 vs. ExPASy Swiss-Prot
Match: Y709_SYNY3 (UPF0076 protein slr0709 OS=Synechocystis sp. (strain PCC 6803) GN=slr0709 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.053e-24
Identity = 57/124 (45.97%), Postives = 83/124 (66.94%), Query Frame = 2
Query:  248 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSD-TIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYF-PSPAPARATYQVAALPLDARVEIECIAALP 613
            + T +APA +GPY+QAI AN  +F +G + L P+T   + +  +E Q +QVL N+G +L+ +G  + +VVKTT+ L D+ DF  VN IY +YF  + APAR+  +VA LP D  VEI+C+A LP
Sbjct:    6 IQTAQAPAPVGPYNQAIAANGFLFTAGQIALDPQTMTIMGEGNVEVQAKQVLTNLGAVLQEAGCGWENVVKTTVFLKDMNDFAAVNAIYGQYFDEATAPARSCVEVARLPKDVLVEIDCVAVLP 129          
BLAST of FC930136 vs. ExPASy Swiss-Prot
Match: Y3206_SULSO (UPF0076 protein SSO3206 OS=Sulfolobus solfataricus GN=SSO3206 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.347e-24
Identity = 53/123 (43.09%), Postives = 82/123 (66.67%), Query Frame = 2
Query:  236 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 604
            +KE + T KAP  +GPYSQ +K  ++++VSG + + P+T + V   IE+QT +V++NI  +L+A+G     VV + + L D+KDF+  NE+Y+KYF +  PAR T +V+ LP D  +EI  IA
Sbjct:    1 MKEIIFTEKAPKPIGPYSQGVKVGDILYVSGQIPVDPKTNEVVGKNIEEQTIRVIENIKAVLEAAGYMLDDVVMSFVYLKDIKDFQRFNEVYSKYFSNKPPARVTVEVSRLPRDVLIEITVIA 123          
BLAST of FC930136 vs. ExPASy Swiss-Prot
Match: Y364_AQUAE (UPF0076 protein aq_364 OS=Aquifex aeolicus GN=aq_364 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 57/121 (47.11%), Postives = 79/121 (65.29%), Query Frame = 2
Query:  248 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFP--SPAPARATYQVAALPLDARVEIECIA 604
            + T KAP  +GPYSQA++ N  +F+SG +G+ PETGK V +  ++Q  Q+ KN+  IL+ +G    ++VK TI + D+K FK +NEIY  YF   S  PAR T  V  LPL+A VEIE +A
Sbjct:    4 IKTPKAPVPVGPYSQAVEVNGFLFISGQIGINPETGKLV-EGFKEQVIQIFKNVDAILEEAGLKRENIVKVTIYITDIKKFKELNEIYEDYFKDVSVKPARVTVGVKELPLNAEVEIEIVA 123          
BLAST of FC930136 vs. ExPASy Swiss-Prot
Match: ALDR_LACLA (Putative regulator aldR OS=Lactococcus lactis subsp. lactis GN=aldR PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = 2
Query:  248 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 604
            + T  APAA+GPY Q    N L++ SG + L P  G+ V D+IE QTEQV+KNI  ILK + +D+  V+KTT  L +++DF   N IY+K+F    PAR+   VA LP +  +EIE IA
Sbjct:    4 IATLDAPAAIGPYVQGKIVNGLLYASGQIPLNPLNGEIVGDSIETQTEQVMKNISAILKEAHSDFDLVIKTTCFLKNIEDFSRFNAIYSKFFDKEFPARSAVGVAGLPKNVLIEIEVIA 122          
BLAST of FC930136 vs. ExPASy Swiss-Prot
Match: Y811_SULTO (UPF0076 protein ST0811 OS=Sulfolobus tokodaii GN=ST0811 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 56/122 (45.90%), Postives = 73/122 (59.84%), Query Frame = 2
Query:  242 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAA 607
            E V T KAP  +GPYSQAIK  N ++VSG + + P T + V   I+ QT QVL NI EI+KA+G   S V    + L D+  F   N +YA+YF    PAR T +V+ LP DA +EI  I +
Sbjct:    2 ETVFTEKAPKPVGPYSQAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSDVAMAFVFLKDMNMFNDFNSVYAEYFKDKPPARVTVEVSRLPKDALIEIAVICS 123          
BLAST of FC930136 vs. ExPASy Swiss-Prot
Match: HMF1_YEAST (Protein HMF1 OS=Saccharomyces cerevisiae GN=HMF1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 2
Query:  248 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAA 607
            V+   APAA   YS A+K NNL+F+SG + + P+  K V  +I D+ EQV++NI  +L+AS +    VVK  I LAD+  F   N +YAKYF +  PAR+   VAALPL   +E+E IAA
Sbjct:    8 VICESAPAAAASYSHAMKVNNLIFLSGQIPVTPDN-KLVEGSIADKAEQVIQNIKNVLEASNSSLDRVVKVNIFLADINHFAEFNSVYAKYFNTHKPARSCVAVAALPLGVDMEMEAIAA 126          
BLAST of FC930136 vs. ExPASy Swiss-Prot
Match: Y142_LEUMC (UPF0076 protein in leuC 5'region OS=Leuconostoc mesenteroides subsp. cremoris PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = 2
Query:  239 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPA----PARATYQVAALPLDARVEIECIA 604
            K+ V T  AP ALGPYSQAI  +N +++SG +G+ PET +F   T  +Q  Q+  NI  IL  +    + +VK  +   D+ DF  VN+IYA+YF + +    PAR+  QVAALP +A++EIE  A
Sbjct:    3 KKVVSTTTAPKALGPYSQAILNDNTLYISGQIGIDPETDEFAGATTAEQAHQIFDNIDNILHEAEFSRNDIVKAALFFDDIADFALVNDIYAQYFDTTSVEEFPARSAVQVAALPKNAKLEIEITA 128          
The following BLAST results are available for this feature:
BLAST of FC930136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
Y1251_PYRAB1.329e-2747.54UPF0076 protein PYRAB12510 OS=Pyrococcus abyssi GN... [more]
YABJ_BACSU2.123e-2547.15UPF0076 protein yabJ OS=Bacillus subtilis GN=yabJ ... [more]
DFRA_MYXXA6.176e-2546.77Protein dfrA OS=Myxococcus xanthus GN=dfrA PE=3 SV... [more]
Y709_SYNY31.053e-2445.97UPF0076 protein slr0709 OS=Synechocystis sp. (stra... [more]
Y3206_SULSO2.347e-2443.09UPF0076 protein SSO3206 OS=Sulfolobus solfataricus... [more]
Y364_AQUAE1.165e-2347.11UPF0076 protein aq_364 OS=Aquifex aeolicus GN=aq_3... [more]
ALDR_LACLA1.521e-2347.06Putative regulator aldR OS=Lactococcus lactis subs... [more]
Y811_SULTO4.426e-2345.90UPF0076 protein ST0811 OS=Sulfolobus tokodaii GN=S... [more]
HMF1_YEAST9.860e-2346.67Protein HMF1 OS=Saccharomyces cerevisiae GN=HMF1 P... [more]
Y142_LEUMC3.747e-2243.65UPF0076 protein in leuC 5'region OS=Leuconostoc me... [more]

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Properties
Property NameValue
Genbank descriptionC34004B09EF PostHarvC1 Citrus clementina cDNA clone C34004B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930136 ID=FC930136; Name=FC930136; organism=Citrus clementina; type=EST; length=709bp
GACTTCGCTCGAGGGAAACTGAGAGAGCAACAGCGACAAAGACGAAGACA
TGGCGTGGTGTTCATTACGGTCGTTGAATGTCCCAACCATCGACATGGGC
GCACTGCGCACCCGCTCTCGCTTAGCCGCCGTCGGAATCGGCTGCGCCTC
GGTCGCCGGGTCCAGCGTCTGGCGCTCTTCTTGCAAGAAACACTCCACTC
CCTTTGCTTGCTTATCCACTTCCGCCGTTTCTAATTTGAAGGAGGCTGTT
GTGACTAACAAGGCTCCAGCAGCATTGGGACCTTATTCTCAGGCCATCAA
AGCAAATAACCTCGTTTTTGTCTCTGGGGTTCTTGGTTTAGTTCCAGAGA
CTGGGAAATTTGTCTCAGATACTATAGAGGACCAGACAGAGCAGGTTCTT
AAAAATATTGGGGAAATACTGAAAGCTAGCGGCGCTGACTATTCCTCTGT
GGTTAAGACAACAATTTTGTTGGCAGACTTGAAAGACTTCAAGACAGTGA
ATGAGATCTATGCTAAATACTTTCCTTCACCAGCTCCAGCACGTGCAACA
TATCAAGTAGCAGCACTGCCGTTGGATGCCAGGGTTGAGATTGAATGCAT
TGCAGCCCTTCCCAATGCTTGATTGGGGTGAAATTCTTCCAGGATAATCG
AATAAAGGGGAAGAAAGCACACCTTTTGAGGACAGGATTTGGAGGCATTT
CTCATTTCC
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