FC930146

Overview
NameFC930146
Unique NameFC930146
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_BACAN (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus anthracis GN=rocA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 66/215 (30.70%), Postives = 120/215 (55.81%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIE--NIKSQGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQG 635
            + + E+ G +          +LA +S++ +A G +GQ+C+ C R +IHE +Y  VL++ V++ K++ + +P   GT +GP++    +  F+K +    I  + G+IL GG   +S+G F+QPTIV +++  A ++KEE+F PV+   K + F+ A+ I N+   GL+ ++ + + ++I K         G +  N    GA +G   FGG  + G
Sbjct:  282 RVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPAVLGTNMGPVN---DQAAFDKVMSYVAIGKEEGRILAGGEGDDSKGWFIQPTIVADVAEDARLMKEEIFGPVVAFCKAKDFDHALAIANNTEYGLTGAVISNNRDHIEK--AREDFHVGNLYFNRGCTGAIVGYQPFGGFNMSG 491          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_BACAH (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus thuringiensis (strain Al Hakam) GN=rocA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 66/215 (30.70%), Postives = 120/215 (55.81%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIE--NIKSQGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQG 635
            + + E+ G +          +LA +S++ +A G +GQ+C+ C R +IHE +Y  VL++ V++ K++ + +P   GT +GP++    +  F+K +    I  + G+IL GG   +S+G F+QPTIV +++  A ++KEE+F PV+   K + F+ A+ I N+   GL+ ++ + + ++I K         G +  N    GA +G   FGG  + G
Sbjct:  282 RVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPAVLGTNMGPVN---DQAAFDKVMSYVAIGKEEGRILAGGEGDDSKGWFIQPTIVADVAEDARLMKEEIFGPVVAFCKAKDFDHALAIANNTEYGLTGAVISNNRDHIEK--AREDFHVGNLYFNRGCTGAIVGYQPFGGFNMSG 491          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_BACAC (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rocA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 66/215 (30.70%), Postives = 120/215 (55.81%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIE--NIKSQGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQG 635
            + + E+ G +          +LA +S++ +A G +GQ+C+ C R +IHE +Y  VL++ V++ K++ + +P   GT +GP++    +  F+K +    I  + G+IL GG   +S+G F+QPTIV +++  A ++KEE+F PV+   K + F+ A+ I N+   GL+ ++ + + ++I K         G +  N    GA +G   FGG  + G
Sbjct:  282 RVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPAVLGTNMGPVN---DQAAFDKVMSYVAIGKEEGRILAGGEGDDSKGWFIQPTIVADVAEDARLMKEEIFGPVVAFCKAKDFDHALAIANNTEYGLTGAVISNNRDHIEK--AREDFHVGNLYFNRGCTGAIVGYQPFGGFNMSG 491          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_BACAA (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus anthracis (strain A0248) GN=rocA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 66/215 (30.70%), Postives = 120/215 (55.81%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIE--NIKSQGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQG 635
            + + E+ G +          +LA +S++ +A G +GQ+C+ C R +IHE +Y  VL++ V++ K++ + +P   GT +GP++    +  F+K +    I  + G+IL GG   +S+G F+QPTIV +++  A ++KEE+F PV+   K + F+ A+ I N+   GL+ ++ + + ++I K         G +  N    GA +G   FGG  + G
Sbjct:  282 RVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPAVLGTNMGPVN---DQAAFDKVMSYVAIGKEEGRILAGGEGDDSKGWFIQPTIVADVAEDARLMKEEIFGPVVAFCKAKDFDHALAIANNTEYGLTGAVISNNRDHIEK--AREDFHVGNLYFNRGCTGAIVGYQPFGGFNMSG 491          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: BADH_BETVU (Betaine aldehyde dehydrogenase, chloroplastic OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 65/173 (37.57%), Postives = 94/173 (54.34%), Query Frame = 3
Query:   12 LELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIE--SEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPE 521
            LEL G +             V   +F    T GQ C+   RLL+HESI    +D+LV   K +KI DP E+G  LGP+ +        K I   KS+G  IL GGS  E   +G F++PTI+ +IS +  I +EE+F PVL V  F + +EA+++ N    GL+S++F++  E
Sbjct:  259 LELGGKSPIIVFEDVDIDQVVEWTMFGCFWTNGQICSATSRLLVHESIAAEFIDRLVKWTKNIKISDPFEEGCRLGPVISKGQYDKIMKFISTAKSEGATILCGGSRPEHLKKGYFIEPTIISDISTSMQIWREEVFGPVLCVKTFSSEDEALELANDTEYGLASAVFSKDLE 431          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: LADH_METMP (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis GN=MMP1487 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23
Identity = 71/234 (30.34%), Postives = 117/234 (50.00%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIVEISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIGGAFGGERLQG---EAVKQEVILGSIHATLDLHN 695
            K  LEL GNN          KLA +S + +    AGQ C +  ++L+ E + +T    +++  K++ +G+PL+K T +GPL +PES    E  I+   S+GG++LIGG+    + + + P ++ I     + K E F P+L ++  +  EEAV I N+   GL + +FT +  N  K       + G + +N      +    FGG +  G   E +K  V   S   T+ +HN
Sbjct:  236 KVTLELGGNNPMIVLKDSDIKLAAKSAVKSKFLNAGQVCISVGQVLVEEEVVETFTKYVIEETKKLILGNPLDKNTDIGPLISPESALRIENLIKQSVSEGGELLIGGN---RQNSLISPAVINIDEENILSKIETFGPILPILTVKDSEEAVNIANNSKYGLQAGLFTNNINNAMKIADE--LEYGGIMINSSPTFRKDNMPFGGVKKSGLGREGIKYTVEEMSETKTVVIHN 464          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_BACWK (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus weihenstephanensis (strain KBAB4) GN=rocA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 66/215 (30.70%), Postives = 120/215 (55.81%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIE--NIKSQGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQG 635
            + + E+ G +          +LA +S++ +A G +GQ+C+ C R +IHE +Y  VL++ V++ K++ +G+P  K   +GP++    +  F+K +    I  + GKI+ GG   +S+G F+QPTIV +++  A ++KEE+F PV+   K + F+ A+ I N+   GL+ ++ + + ++I K         G +  N    GA +G   FGG  + G
Sbjct:  282 RVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVGNPDAKDINMGPVN---DQAAFDKVMSYVAIGKEEGKIVSGGEGDDSKGWFIQPTIVADVAEDARLMKEEIFGPVVAFCKAKDFDHALAIANNTEYGLTGAVLSNNRDHIEK--AREDFHVGNLYFNRGCTGAIVGYQPFGGFNMSG 491          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA2_BACHD (1-pyrroline-5-carboxylate dehydrogenase 2 OS=Bacillus halodurans GN=rocA2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 62/213 (29.11%), Postives = 115/213 (53.99%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTI-VEISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQG 635
            + ++E+ G +           LA +S++ +A G +GQ+C+   R +IH+ +Y  VL++ V + KQ+ +G+P      +GP+    +       IE +  + G++++GG   +S+G F+QPTI  ++ P A I++EE+F PV+   K + F+ A++I N+   GL+ ++ T +  +I K         G +  N    GA +G   FGG ++ G
Sbjct:  282 RVIVEMGGKDTVVVDKDADLDLAAQSIVTSAFGFSGQKCSAGSRAVIHQDVYDVVLEKAVALTKQLSVGEPTAPDVYMGPVVDQGAFSKIMSYIE-VGKEEGRLMVGGEGDDSKGFFIQPTIFADVDPHARIMQEEIFGPVVAFSKARDFDHALEIANNTEYGLTGAVITTNRHHIEK--AKRDFHVGNLYFNRNCTGAIVGYHPFGGFKMSG 491          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA1_BACHD (1-pyrroline-5-carboxylate dehydrogenase 1 OS=Bacillus halodurans GN=rocA1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 64/213 (30.05%), Postives = 114/213 (53.52%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQG 635
            + ++E+ G +           LA  S+L +A G +GQ+C+   R +IH+ +Y  VL++ V + K + +GDP  +   +GP+   ++ +     IE I  + G+++ GG    S G F+QPTI+ ++ P A I++EE+F PV+   K   F+ A++I N+   GL+ ++ TR+  +I +         G +  N    GA +G   FGG ++ G
Sbjct:  282 RVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIHKDVYDEVLEKTVALAKNLTVGDPTNRDNYMGPVIDEKAFEKIMSYIE-IGKKEGRLMTGGEGDSSTGFFIQPTIIADLDPEAVIMQEEIFGPVVAFSKANDFDHALEIANNTEYGLTGAVITRNRAHIEQ--AKREFHVGNLYFNRNCTGAIVGYHPFGGFKMSG 491          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: BADH_SPIOL (Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 65/173 (37.57%), Postives = 92/173 (53.18%), Query Frame = 3
Query:   12 LELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIE--SEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPE 521
            LEL G +             V   +F    T GQ C+   RLL+HESI    +D+LV   K +KI DP E+G  LGP+ +        K I   KS+G  IL GGS  E   +G +++PTIV +IS +  I KEE+F PVL V  F + +EA+ + N    GL++++F+   E
Sbjct:  256 LELGGKSPIVVFEDVDIDKVVEWTIFGCFWTNGQICSATSRLLVHESIAAEFVDKLVKWTKNIKISDPFEEGCRLGPVISKGQYDKIMKFISTAKSEGATILYGGSRPEHLKKGYYIEPTIVTDISTSMQIWKEEVFGPVLCVKTFSSEDEAIALANDTEYGLAAAVFSNDLE 428          
The following BLAST results are available for this feature:
BLAST of FC930146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ROCA_BACAN2.552e-2330.701-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA_BACAH2.552e-2330.701-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA_BACAC2.552e-2330.701-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA_BACAA2.552e-2330.701-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
BADH_BETVU3.334e-2337.57Betaine aldehyde dehydrogenase, chloroplastic OS=B... [more]
LADH_METMP4.354e-2330.34Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
ROCA_BACWK5.686e-2330.701-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA2_BACHD1.267e-2229.111-pyrroline-5-carboxylate dehydrogenase 2 OS=Bacil... [more]
ROCA1_BACHD1.267e-2230.051-pyrroline-5-carboxylate dehydrogenase 1 OS=Bacil... [more]
BADH_SPIOL1.267e-2237.57Betaine aldehyde dehydrogenase, chloroplastic OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC34004C07EF PostHarvC1 Citrus clementina cDNA clone C34004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930146 ID=FC930146; Name=FC930146; organism=Citrus clementina; type=EST; length=704bp
GTAAATGTTTACTTGAATTAAGTGGAAACAATGCTATTATTATTATGGAT
GATGCCGACATCAAACTAGCTGTTCGTTCTGTCCTATTTGCTGCTGTCGG
TACAGCTGGTCAGCGCTGCACAACTTGTCGTAGACTGCTTATTCACGAAA
GCATATACCAGACAGTGCTTGATCAACTAGTTGATGTGTACAAACAAGTT
AAGATAGGAGATCCATTAGAAAAAGGTACCTTGCTCGGGCCATTGCATAC
TCCTGAATCAAGGAAGAATTTCGAGAAAGGAATTGAGAACATCAAATCTC
AGGGAGGGAAGATCCTTATAGGTGGTTCTGTTATAGAGTCTGAGGGGAAC
TTTGTGCAGCCCACAATAGTTGAGATTAGTCCAACAGCTGACATTGTTAA
AGAAGAGTTGTTTGCTCCTGTCCTTTATGTTATGAAATTTCAGACCTTCG
AAGAAGCAGTTAAGATCAATAATTCAGTACCCCAGGGATTGAGTAGTTCT
ATTTTCACCCGCAGTCCTGAAAATATTTTCAAGTGGCTAGGGCCACATGG
AAGTGACACTGGTATTGTGAATGTAAATATACCTACAAATGGGGCTGAAA
TTGGTGGTGCTTTTGGTGGTGAAAGGCTACAGGGGGAGGCCGTGAAGCAG
GAAGTGATTCTTGGAAGCATACATGCGACGCTCGACTTGCACAATCACTA
TGGA
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