FC930169

Overview
NameFC930169
Unique NameFC930169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_SHEFN (Adenine phosphoribosyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=apt PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.762e-42
Identity = 79/160 (49.38%), Postives = 114/160 (71.25%), Query Frame = 3
Query:  216 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            +A I  +I+ IPD+P PGIMF+D+T+LL + +A++ TI + V  Y+ K  + V G EARGF+FG P+AL +G  FVP+RKP KLP + IS+ Y LEYGKD +E+HV A+ A ++ L++DDL+ATGGT+ A ++L+  +G  V   A VI LPE+ G + L
Sbjct:    7 LALIKQSIKTIPDYPIPGIMFRDVTSLLENAEAYKATIAILVAHYQSKGFTKVVGTEARGFLFGAPLALELGVGFVPVRKPGKLPRKTISQTYDLEYGKDTLEIHVDAINANDKVLVIDDLLATGGTIEATVKLIRELGGEVSHAAFVISLPEIGGEKRL 166          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_PASMU (Adenine phosphoribosyltransferase OS=Pasteurella multocida GN=apt PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.762e-42
Identity = 84/161 (52.17%), Postives = 117/161 (72.67%), Query Frame = 3
Query:  213 RIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            ++A I S+I+ IP+ PK GI+F+DIT+LL    AF+  +DLFV RYK+K I+ V G E+RGFIFG P+ALA+   FV +RKP KLP E IS+ Y LEYG+D +E+H  A+ A ++ LI+DDL+ATGGT+ A ++L++R+G  V + A VI LP+L G   L
Sbjct:    4 KLALIKSSIKSIPNHPKEGIIFRDITSLLEVPAAFQTVVDLFVTRYKEKGITKVLGTESRGFIFGAPVALALNVPFVLVRKPGKLPRETISQTYQLEYGQDTLEIHTDAIHAQDKVLIIDDLLATGGTVEATVKLVQRLGGDVQDAAFVINLPDLGGEARL 164          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_LEPBA (Adenine phosphoribosyltransferase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=apt PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.762e-42
Identity = 79/161 (49.07%), Postives = 118/161 (73.29%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGEKH 707
            + S IR IPD+PKPGI+F+DIT+LL+D + F+ TI +FVERY++  ++ +A I+ARGFI G  +A  +G  FVP+RK  KLPG  ISE Y+LEYG D +E+H  A+  G++ LI+DDL+ATGGTL A+I+L++ +   + EC+ +I LP+L G + + + +
Sbjct:    4 VKSKIRTIPDYPKPGILFRDITSLLIDPEGFQLTIGMFVERYQNAKLNKIAAIDARGFIPGAALAFQLGVGFVPIRKKGKLPGNTISESYALEYGVDHVEIHTDAIVPGDKVLIMDDLIATGGTLEASIKLIQNLKGQIHECSTIINLPDLGGAKRIKDTY 164          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_CLOD6 (Adenine phosphoribosyltransferase OS=Clostridium difficile (strain 630) GN=apt PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.762e-42
Identity = 85/157 (54.14%), Postives = 111/157 (70.70%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            + + IR I DFPKPGI F+D+TTL  D  AF+  +D  VE  KDK++ +V G EARGF+ G P+A A+G  FVP+RKP KLPGEV S EY LEYG D +E+H  A++ G++  IVDDL+ATGGT+ AA +L+E++G  VV    +IEL  L GRE L
Sbjct:    3 LKNFIRNIDDFPKPGIDFKDVTTLFKDGDAFKYAVDSIVEELKDKDVDLVIGPEARGFLMGTPVAYALGVGFVPIRKPGKLPGEVESYEYGLEYGTDTLEIHKDAIKKGQKVAIVDDLLATGGTMEAAAKLVEKLGGEVVSMQFLIELKFLNGREKL 159          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_BRASO (Adenine phosphoribosyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=apt PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.762e-42
Identity = 84/157 (53.50%), Postives = 108/157 (68.79%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            I + +R IPD+PKPGI+F+DITTLL D +AFR  +D  V  +    I  VAGIEARGFI G  +A  + A FVP+RK  KLP + +S  Y+LEYG D MEMHV AVQ GER ++VDDL+ATGGT   A++LL ++G  VV    +I+LP+L G   L
Sbjct:    7 IKNTVRTIPDYPKPGILFRDITTLLADARAFRRAVDELVHPWAGSKIDKVAGIEARGFILGGAVAHQLSAGFVPIRKKGKLPHKTVSMSYALEYGTDEMEMHVDAVQPGERVILVDDLIATGGTAEGAVKLLRQIGATVVAACFIIDLPDLGGAAKL 163          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_BRASB (Adenine phosphoribosyltransferase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=apt PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.762e-42
Identity = 84/157 (53.50%), Postives = 108/157 (68.79%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            I + +R IPD+PKPGI+F+DITTLL D +AFR  +D  V  +    I  VAGIEARGFI G  +A  + A FVP+RK  KLP + +S  Y+LEYG D MEMHV AVQ GER ++VDDL+ATGGT   A++LL ++G  VV    +I+LP+L G   L
Sbjct:    7 IKNTVRTIPDYPKPGILFRDITTLLADARAFRRAVDELVHPWAGSKIDKVAGIEARGFILGGAVAHQLSAGFVPIRKKGKLPHKTVSMSYALEYGTDEMEMHVDAVQPGERVILVDDLIATGGTAEGAVKLLRQIGATVVAACFIIDLPDLGGAAKL 163          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_BORPD (Adenine phosphoribosyltransferase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=apt PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.762e-42
Identity = 81/153 (52.94%), Postives = 112/153 (73.20%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKG 683
            I   IR +PD+P+PG++F+DIT LL D + FR  IDLFV RY  + + +VAG++ARGFI G  +A  +   FVP+RK  KLP   ++E Y+LEYG   +EMH  +V+ G+R L+VDDL+ATGGT+ AAI+LL+R+G +VVE A +I+LPEL G
Sbjct:    9 IRRTIRSVPDWPRPGVVFRDITPLLQDPRTFRVLIDLFVYRYMRQRLDLVAGVDARGFIIGSVLAYELNLGFVPVRKQGKLPYRTVAESYTLEYGNSSVEMHTDSVRTGQRVLLVDDLIATGGTMLAAIKLLQRLGANVVEAAAIIDLPELGG 161          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_RALEH (Adenine phosphoribosyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=apt PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.525e-42
Identity = 84/173 (48.55%), Postives = 117/173 (67.63%), Query Frame = 3
Query:  189 ADVKAQDPRIAGISS----AIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            AD   Q P +  ++      IR +PD+P PG+MF+DIT LL + K  R  ID+FV RY D  + +VAGI+ARGFI G  +A  +   FVP+RK  KLP + ++EEY LEYG   +E+H  A ++G+R L+VDDL+ATGGT+ A ++LLER+G  VVE A +++LPEL G + L
Sbjct:    2 ADSIIQSPELGDVTGYLRERIRTVPDWPMPGVMFRDITPLLQNPKTLRVLIDVFVHRYMDAQLDLVAGIDARGFILGAIVAYELNLGFVPIRKKGKLPFQTVAEEYELEYGSATVEIHADACKSGDRVLLVDDLIATGGTMMAGLKLLERLGATVVEGAAIVDLPELGGSKLL 174          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_MESSB (Adenine phosphoribosyltransferase OS=Mesorhizobium sp. (strain BNC1) GN=apt PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.525e-42
Identity = 84/155 (54.19%), Postives = 108/155 (69.68%), Query Frame = 3
Query:  231 SAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            +AIR IPD+P+PGI+F+DITTLL D +AFR  +D  V  Y    I  +AGIEARGFI G  IA  + + F+P+RK  KLP E +   YSLEYG D MEMH+ AV  GE+ ++VDDL+ATGGT  AA+RLL ++G  +V    VI+LP+L GR  L
Sbjct:   11 AAIRTIPDYPRPGILFRDITTLLGDARAFRRAVDELVHPYAGAKIDKIAGIEARGFILGGAIAHQLSSGFIPIRKKGKLPHETVRVAYSLEYGLDEMEMHIDAVSPGEKVILVDDLIATGGTAEAAVRLLRQMGAEIVAACFVIDLPDLGGRAKL 165          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_HERA2 (Adenine phosphoribosyltransferase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=apt PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.828e-42
Identity = 83/162 (51.23%), Postives = 116/162 (71.60%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGEKHY 710
            ++  +R IPDFP PG+ F+DIT LL + +AF   I+ F +RY ++ +  + GIE+RGFIFG P+AL +G  FVP+RKP KLP + I  +YSLEYG + +E+H  A+QAG+R ++VDDL+ATGGT+ AA  LL ++G  VVE A +IEL  L GRE LG + +
Sbjct:    5 LTQFVRNIPDFPIPGVQFKDITPLLGNAQAFDAAIEHFAQRYANQQLQAIVGIESRGFIFGAPLALRLGIGFVPIRKPGKLPAQTIGVDYSLEYGTNRLEIHNDALQAGDRVVVVDDLLATGGTVVAACDLLNQLGAEVVEAAFLIELTFLGGREKLGNRPF 166          
The following BLAST results are available for this feature:
BLAST of FC930169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_SHEFN5.762e-4249.38Adenine phosphoribosyltransferase OS=Shewanella fr... [more]
APT_PASMU5.762e-4252.17Adenine phosphoribosyltransferase OS=Pasteurella m... [more]
APT_LEPBA5.762e-4249.07Adenine phosphoribosyltransferase OS=Leptospira bi... [more]
APT_CLOD65.762e-4254.14Adenine phosphoribosyltransferase OS=Clostridium d... [more]
APT_BRASO5.762e-4253.50Adenine phosphoribosyltransferase OS=Bradyrhizobiu... [more]
APT_BRASB5.762e-4253.50Adenine phosphoribosyltransferase OS=Bradyrhizobiu... [more]
APT_BORPD5.762e-4252.94Adenine phosphoribosyltransferase OS=Bordetella pe... [more]
APT_RALEH7.525e-4248.55Adenine phosphoribosyltransferase OS=Ralstonia eut... [more]
APT_MESSB7.525e-4254.19Adenine phosphoribosyltransferase OS=Mesorhizobium... [more]
APT_HERA29.828e-4251.23Adenine phosphoribosyltransferase OS=Herpetosiphon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34004E06EF PostHarvC1 Citrus clementina cDNA clone C34004E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930169 ID=FC930169; Name=FC930169; organism=Citrus clementina; type=EST; length=730bp
GACTTCTTAACTCTTCAAACCTCTCCCTTCGCTTTGCATCTCAAACGCAG
ACACGACTCTCTCCCTGGATCGCCGCTCCCTCCTCTGTTCGCCTACCGTT
GAACCGCTCGCAAAATTACAGAATTGCACTCCCTCCTCTGCATTCCACCG
TGAGTGGTGACTCGACGCAACCTCAACAAATGGCTTCAGCTGACGTAAAA
GCACAAGACCCTCGAATCGCTGGGATTTCCTCAGCAATTCGTGTCATCCC
AGACTTCCCTAAACCAGGGATTATGTTTCAAGATATCACAACATTGCTTC
TTGATACCAAGGCTTTTAGAGATACTATTGATCTGTTCGTTGAGAGGTAC
AAGGACAAAAACATCTCTGTTGTTGCAGGTATTGAAGCTAGGGGTTTTAT
ATTTGGGCCTCCTATTGCATTGGCTATTGGGGCAAAGTTTGTTCCTATGA
GGAAACCTAAGAAGCTTCCTGGGGAGGTTATTTCCGAAGAGTATTCCTTG
GAATATGGAAAAGATGTAATGGAGATGCATGTAGGTGCTGTACAAGCAGG
GGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAACTGGTGGGACCTTGT
CTGCTGCAATCAGGCTACTTGAGCGAGTTGGGGTGCATGTGGTTGAGTGT
GCATGCGTGATTGAACTGCCAGAGCTAAAGGGTCGGGAAACGCTGGGAGA
GAAACACTATTTGTCTTGTAGCTAAACTTG
back to top