FC930169

Overview
NameFC930169
Unique NameFC930169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_PARL1 (Adenine phosphoribosyltransferase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=apt PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.878e-41
Identity = 82/157 (52.23%), Postives = 108/157 (68.79%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            +   IR IPD+PKPGI+F+DITTLL D + FR  +D  V  +K     VVAGIEARGFI G  +A  +G  F+P+RK  KLP   I +EY LEYG D++E+H  AV+  +R L++DDL+ATGGT  AA++L+ R G +V+  + VIELPEL GR  L
Sbjct:    3 VKDFIRTIPDYPKPGILFRDITTLLSDPEGFRGAVDALVSLHKGAKFDVVAGIEARGFILGGAVAHQLGLGFIPVRKKGKLPFTTIGQEYDLEYGTDMVEIHTDAVKPDQRVLLIDDLIATGGTAEAAVKLIARAGGNVLASSFVIELPELGGRARL 159          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_DINSH (Adenine phosphoribosyltransferase OS=Dinoroseobacter shibae (strain DFL 12) GN=apt PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.878e-41
Identity = 83/155 (53.55%), Postives = 109/155 (70.32%), Query Frame = 3
Query:  237 IRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGE 701
            IR IPDFP  GIMF+D+TTL  D + FR  +D  ++ + D  I  VAG+EARGFI G  +A  +   FVP+RK  KLPG+ I+++Y LEYGK  +E+H  A Q GER L+VDDL+ATGGT  A I+L+ER+G  VV CA +I+LP+L GR+ L E
Sbjct:   11 IRTIPDFPHEGIMFRDVTTLFADPRGFRIAVDQLLDPFVDVKIDKVAGLEARGFILGGAVAHQLSVGFVPIRKKGKLPGKTIAQDYVLEYGKATVEIHDDAFQPGERVLLVDDLLATGGTARAGIQLIERLGAEVVGCAFLIDLPDLGGRKLLEE 165          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_BURS3 (Adenine phosphoribosyltransferase OS=Burkholderia sp. (strain 383) GN=apt PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.878e-41
Identity = 85/163 (52.15%), Postives = 112/163 (68.71%), Query Frame = 3
Query:  207 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            DP +A I S IR +PD+P+PG+MF+DITTLL   KA R  +DLFVERY D  +  VAG++ARGFI  P +A  +   FVP+RK  KLP +  SE Y LEYG   +E+H  A + G+R +I+DDL+ATGGT+ A   LL+R+G  VVE A +I+LP+L G   L
Sbjct:   11 DP-VAFIHSQIRTVPDWPQPGVMFRDITTLLQSPKALRILVDLFVERYVDAKLDYVAGLDARGFIIAPIVAYELSVGFVPIRKVGKLPYKTRSESYDLEYGSATVEIHEDACRPGDRVIIMDDLIATGGTMMAGRNLLQRLGAEVVEGAAIIDLPDLGGSALL 172          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_BURM1 (Adenine phosphoribosyltransferase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=apt PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.878e-41
Identity = 86/163 (52.76%), Postives = 112/163 (68.71%), Query Frame = 3
Query:  207 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            DP +A I S IR +PD+P+PG+MF+DITTLL   KA R  +DLFVERY D  +  VAG++ARGFI  P +A  +   FVP+RK  KLP +  SE Y LEYG   +E+H  A + G+R +I+DDL+ATGGT+ A   LLER+G  VVE A +I+LP+L G   L
Sbjct:   11 DP-VAFIHSQIRTVPDWPQPGVMFRDITTLLQSPKALRILVDLFVERYVDAKLDYVAGLDARGFIIAPIVAYELSVGFVPIRKVGKLPYKTRSESYELEYGSATVEIHEDACKPGDRVIIMDDLIATGGTMMAGRNLLERLGAVVVEGAAIIDLPDLGGSALL 172          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_AZOC5 (Adenine phosphoribosyltransferase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=apt PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.878e-41
Identity = 81/157 (51.59%), Postives = 110/157 (70.06%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            ++S +R IPD+PKPG+MF+DITTLL + +AFR T+D  V+ +    I  VAGIEARGFI G  +A  + A FVP+RK  KLP + +   Y+LEYG+D MEMHV AV  GER ++VDDL+ATGGT   A++LL ++G  V     +++LP+L G E L
Sbjct:    7 LASVVRTIPDYPKPGVMFRDITTLLGNPQAFRRTVDELVQPWAGAKIDKVAGIEARGFIVGGAVAHQLSAGFVPIRKKGKLPHQTVRMAYALEYGQDEMEMHVDAVHPGERVILVDDLIATGGTAEGAVKLLRQIGAQVEAACFIVDLPDLGGAEKL 163          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_VIBF1 (Adenine phosphoribosyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=apt PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.370e-41
Identity = 81/168 (48.21%), Postives = 114/168 (67.86%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGR---ETLGEKHYLSC 719
            I ++I+ IPD+PK GIMF+D+T+L+ D KA++ TI   VE+YK    + + G EARGF+FG P+AL +G  FVP+RKP KLP   I++ Y LEYG D +E+H  A+  G++ L+VDDL+ATGGT+ A ++L+ ++G  V   A VI LPE+ G    E LG   Y  C
Sbjct:    9 IKNSIKSIPDYPKAGIMFRDVTSLMEDPKAYQATIQSLVEKYKQGGFTKIVGTEARGFLFGAPLALELGVGFVPVRKPGKLPRPTIAQTYDLEYGTDTLEIHTDAIVEGDKVLVVDDLLATGGTIEATVKLIRQLGGEVEHAAFVINLPEIGGETRLEGLGLNVYSIC 176          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_SHESR (Adenine phosphoribosyltransferase OS=Shewanella sp. (strain MR-7) GN=apt PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.370e-41
Identity = 77/157 (49.04%), Postives = 113/157 (71.97%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            I  +I+ IP++PK GI+F+D+T+LL +  A++ TIDL VE+Y++K  + + G EARGF+FG P+AL +G  FVP+RKP KLP   IS+ Y LEYG D +E+H  A+ A ++ L+VDDL+ATGGT+ A ++L+ ++G  V + A VI LP+L G   L
Sbjct:   11 IKQSIKTIPNYPKEGILFRDVTSLLENAVAYKATIDLLVEQYRNKGFTKIVGTEARGFLFGAPLALELGIGFVPVRKPGKLPRATISQSYELEYGHDSLEIHTDAITANDKVLVVDDLLATGGTIEATVKLIRQLGGEVQDAAFVISLPDLGGEARL 167          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_SHEON (Adenine phosphoribosyltransferase OS=Shewanella oneidensis GN=apt PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.370e-41
Identity = 77/157 (49.04%), Postives = 111/157 (70.70%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            I  +I+ IP++PK GI+F+D+T+LL +  A++ TIDL VE Y+ K  + + G EARGF+FG P+AL +G  FVP+RKP KLP   IS+ Y LEYG D +E+H  A+ A ++ L+VDDL+ATGGT+ A ++L+ ++G  V + A VI LP+L G   L
Sbjct:    9 IKQSIKTIPNYPKEGILFRDVTSLLENATAYKATIDLLVEHYRSKGFTKIVGTEARGFLFGAPLALGLGIGFVPVRKPGKLPRATISQSYELEYGHDSLEIHTDAITANDKVLVVDDLLATGGTIEATVKLIRQLGGEVQDAAFVISLPDLGGEARL 165          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_DESOH (Adenine phosphoribosyltransferase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=apt PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.370e-41
Identity = 79/157 (50.32%), Postives = 112/157 (71.34%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            + + IR +P++P  G+MF+DITTLL D  AF++ I+ F +RY+   I  + GI+ARG IFG P+A  +   FVP+RK  K+P   I   YSLEYG+ ++E+H  A+  GER ++VDDL+ATGGT+ A I L+E++G  VVECA VI+LP+LKGRE +
Sbjct:    3 LKATIRTLPNWPIEGVMFRDITTLLQDPAAFKEAINRFYDRYRTMKIDKIVGIDARGLIFGAPLAYKLEVGFVPVRKKGKIPFRTIGAAYSLEYGESMVEIHEDAILKGERVVVVDDLIATGGTVKATIDLVEKLGGEVVECAFVIDLPDLKGREKI 159          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_BURVG (Adenine phosphoribosyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=apt PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.370e-41
Identity = 85/163 (52.15%), Postives = 112/163 (68.71%), Query Frame = 3
Query:  207 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            DP +A I S IR +PD+P+PG+MF+DITTLL   KA R  +DLFVERY D  +  VAG++ARGFI  P +A  +   FVP+RK  KLP +  SE Y LEYG   +E+H  A + G+R +I+DDL+ATGGT+ A   LL+R+G  VVE A +I+LP+L G   L
Sbjct:   11 DP-VAFIHSQIRTVPDWPQPGVMFRDITTLLQSPKALRILVDLFVERYVDAKLDYVAGLDARGFIIAPIVAYELSVGFVPIRKVGKLPYKTCSESYDLEYGSATVEIHEDACRPGDRVIIMDDLIATGGTMMAGRNLLQRLGAVVVEGAAIIDLPDLGGSTLL 172          
The following BLAST results are available for this feature:
BLAST of FC930169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_PARL14.878e-4152.23Adenine phosphoribosyltransferase OS=Parvibaculum ... [more]
APT_DINSH4.878e-4153.55Adenine phosphoribosyltransferase OS=Dinoroseobact... [more]
APT_BURS34.878e-4152.15Adenine phosphoribosyltransferase OS=Burkholderia ... [more]
APT_BURM14.878e-4152.76Adenine phosphoribosyltransferase OS=Burkholderia ... [more]
APT_AZOC54.878e-4151.59Adenine phosphoribosyltransferase OS=Azorhizobium ... [more]
APT_VIBF16.370e-4148.21Adenine phosphoribosyltransferase OS=Vibrio fische... [more]
APT_SHESR6.370e-4149.04Adenine phosphoribosyltransferase OS=Shewanella sp... [more]
APT_SHEON6.370e-4149.04Adenine phosphoribosyltransferase OS=Shewanella on... [more]
APT_DESOH6.370e-4150.32Adenine phosphoribosyltransferase OS=Desulfococcus... [more]
APT_BURVG6.370e-4152.15Adenine phosphoribosyltransferase OS=Burkholderia ... [more]

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Properties
Property NameValue
Genbank descriptionC34004E06EF PostHarvC1 Citrus clementina cDNA clone C34004E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930169 ID=FC930169; Name=FC930169; organism=Citrus clementina; type=EST; length=730bp
GACTTCTTAACTCTTCAAACCTCTCCCTTCGCTTTGCATCTCAAACGCAG
ACACGACTCTCTCCCTGGATCGCCGCTCCCTCCTCTGTTCGCCTACCGTT
GAACCGCTCGCAAAATTACAGAATTGCACTCCCTCCTCTGCATTCCACCG
TGAGTGGTGACTCGACGCAACCTCAACAAATGGCTTCAGCTGACGTAAAA
GCACAAGACCCTCGAATCGCTGGGATTTCCTCAGCAATTCGTGTCATCCC
AGACTTCCCTAAACCAGGGATTATGTTTCAAGATATCACAACATTGCTTC
TTGATACCAAGGCTTTTAGAGATACTATTGATCTGTTCGTTGAGAGGTAC
AAGGACAAAAACATCTCTGTTGTTGCAGGTATTGAAGCTAGGGGTTTTAT
ATTTGGGCCTCCTATTGCATTGGCTATTGGGGCAAAGTTTGTTCCTATGA
GGAAACCTAAGAAGCTTCCTGGGGAGGTTATTTCCGAAGAGTATTCCTTG
GAATATGGAAAAGATGTAATGGAGATGCATGTAGGTGCTGTACAAGCAGG
GGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAACTGGTGGGACCTTGT
CTGCTGCAATCAGGCTACTTGAGCGAGTTGGGGTGCATGTGGTTGAGTGT
GCATGCGTGATTGAACTGCCAGAGCTAAAGGGTCGGGAAACGCTGGGAGA
GAAACACTATTTGTCTTGTAGCTAAACTTG
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