FC930169

Overview
NameFC930169
Unique NameFC930169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_VIBSL (Adenine phosphoribosyltransferase OS=Vibrio splendidus (strain LGP32) GN=apt PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.043e-40
Identity = 75/161 (46.58%), Postives = 114/161 (70.81%), Query Frame = 3
Query:  213 RIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            +I+ I ++I+ IPD+PK GI+F+D+T+L+ D  A++ TIDL V+ YK    + + G EARGF+FG P+AL +G  F+P+RKP KLP + +++ Y LEYG D +E+H  A+  G++ L+VDDL+ATGGT+ A  +L+ ++G  V   A VI LPE+ G + L
Sbjct:    5 KISLIKASIKSIPDYPKAGILFRDVTSLMEDPAAYKATIDLLVDTYKGMGFTKIVGTEARGFLFGAPLALELGVGFIPVRKPGKLPRQTVAQSYELEYGTDTLEIHTDAIVEGDKVLMVDDLLATGGTIEATTKLIRQLGGVVEHAAFVINLPEIGGDKRL 165          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_THEEB (Adenine phosphoribosyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=apt PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.043e-40
Identity = 80/157 (50.96%), Postives = 109/157 (69.43%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            + S IR +PDFPKPGI+F+D+TTLL +    R  ID  VE++ +  I  VAGIE+RGFIFG P+A  +GA F+P+RKP KL   V + EY LEYG+D +EMH  A++ G R LIVDDL+ATGGT +AA  L+++    +   A ++EL +L GR+ L
Sbjct:    3 LKSLIRDVPDFPKPGILFRDLTTLLQNQAGLRYVIDQLVEKHANAGIDYVAGIESRGFIFGAPLAYRLGAGFIPLRKPGKLCAPVYAVEYELEYGRDRLEMHQDAIEPGRRVLIVDDLIATGGTAAAAAGLIQKAQAELYGFAFIVELTDLAGRQKL 159          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_RHOP2 (Adenine phosphoribosyltransferase OS=Rhodopseudomonas palustris (strain HaA2) GN=apt PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.043e-40
Identity = 79/153 (51.63%), Postives = 108/153 (70.59%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKG 683
            + +++R IPD+PKPGIMF+DITTL+ D ++FR  +D  V+ +    I  VAGIEARGFI G  IA  + + FVP+RK  KLP   +S EY+LEYG D +E+HV A+  GER ++VDDL+ATGGT   AI+LL ++G  VV    +I+LP+L G
Sbjct:    9 LKASVRTIPDYPKPGIMFRDITTLMGDPRSFRRAVDELVQPWAGSKIDKVAGIEARGFIIGGAIAHQVSSGFVPIRKKGKLPHTCVSMEYTLEYGTDHIEIHVDAITPGERVILVDDLIATGGTAEGAIKLLRQIGAEVVAACFIIDLPDLGG 161          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_RHOFD (Adenine phosphoribosyltransferase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=apt PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.043e-40
Identity = 78/155 (50.32%), Postives = 107/155 (69.03%), Query Frame = 3
Query:  237 IRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNI--SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            IR +PD+P PG+ F+DIT LL D K FR  ID F+ RY D +I   VVAG++ARGFI G  +A  +   FVP+RK  KLP   + E Y LEYG   +E+H  AV+ G+R L++DDL+ATGGT+ A ++LLE++G  V+E A +++LPEL G + L
Sbjct:   24 IRTVPDWPAPGVQFRDITPLLQDAKVFRVLIDAFIHRYMDPSIRPDVVAGLDARGFILGAVVAYELNVGFVPIRKKGKLPFTTVEETYELEYGSATVELHTDAVKPGDRVLLIDDLIATGGTMMAGMKLLEKLGAQVIEGAAIVDLPELGGSDKL 178          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_RHIME (Adenine phosphoribosyltransferase OS=Rhizobium meliloti GN=apt PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.043e-40
Identity = 83/155 (53.55%), Postives = 107/155 (69.03%), Query Frame = 3
Query:  231 SAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            SAIR IPD+PKPG+MF+DITTLL + +AFR  ID  V  Y    +  VAGIEARGFI G  IA  + A F+P+RK  KLP + +   YSLEYG D MEMH  AV  G++ ++VDDL+ATGGT   A +LL+++G  +V    +I+LPEL GR+ L
Sbjct:   10 SAIRSIPDYPKPGVMFRDITTLLGNPRAFRRAIDELVHPYAGTKVDKVAGIEARGFILGGAIAHQLSAGFIPIRKKGKLPHDTVRIAYSLEYGVDEMEMHRDAVAPGDKVILVDDLIATGGTAEGAAKLLKQMGADIVAACFIIDLPELGGRKKL 164          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_METNO (Adenine phosphoribosyltransferase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=apt PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.043e-40
Identity = 86/164 (52.44%), Postives = 110/164 (67.07%), Query Frame = 3
Query:  207 DPR-IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            DPR ++ +  AIR IPD+PKPGI+F+DITTLL D  AFR  +D  V  +    I  VAGIEARGFI G  +A  + + FVP+RK  KLP   +S  Y+LEYG D ME+H  AV+ G+R ++VDDL+ATGGT  AA+ LL ++G  VV    VI+LPEL G   L
Sbjct:    2 DPRTLSALKDAIRSIPDYPKPGIVFRDITTLLGDPGAFRRAVDALVHPFAGGRIDQVAGIEARGFILGGAVAHQLSSGFVPIRKKGKLPHTTVSIAYALEYGTDEMEIHSDAVKPGDRVVLVDDLIATGGTAKAAVDLLRQIGAEVVAACFVIDLPELGGAAKL 165          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_CYAP4 (Adenine phosphoribosyltransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=apt PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.043e-40
Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            + S IR +PDFPKPGI+F+DITTLL + +  R TID   + + D+ I  VAGIE+RGFIFG P+A  +GA FVP+RK  KL  EV + EY+LEYG D +E+H  A+  G R LIVDDL+ATGGT +AA +L+   G  +V  A +IEL +L GR+ L
Sbjct:    3 LKSLIREVPDFPKPGILFRDITTLLQNEQGLRYTIDRLTQAFSDQAIDYVAGIESRGFIFGAPLAYKLGAGFVPIRKAGKLCAEVHTVEYALEYGTDRLEIHKDAIHTGGRVLIVDDLIATGGTAAAAAQLITLCGGDLVSYAFIIELQDLGGRKNL 159          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_SINMW (Adenine phosphoribosyltransferase OS=Sinorhizobium medicae (strain WSM419) GN=apt PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.199e-40
Identity = 83/155 (53.55%), Postives = 106/155 (68.39%), Query Frame = 3
Query:  231 SAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            SAIR IPD+PKPG+MF+DITTLL + +AFR  ID  V  Y    +  VAGIEARGFI G  IA  + A F+P+RK  KLP + +   YSLEYG D MEMH  AV  G++ ++VDDL+ATGGT   A +LL+++G  +V    +I+LPEL GR  L
Sbjct:   10 SAIRSIPDYPKPGVMFRDITTLLGNPRAFRRAIDELVHPYAGTKVDKVAGIEARGFILGGAIAHQLSAGFIPIRKRGKLPHDTVRIAYSLEYGVDEMEMHRDAVVPGDKVILVDDLIATGGTAEGAAKLLQQMGAEIVAACFIIDLPELGGRRKL 164          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_SHESW (Adenine phosphoribosyltransferase OS=Shewanella sp. (strain W3-18-1) GN=apt PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.199e-40
Identity = 75/157 (47.77%), Postives = 110/157 (70.06%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            I  +I+ IP++PK GI+F+D+T+LL +  A++  IDL VE Y+ +  + + G EARGF+FG P+AL +G  FVP+RKP KLP   IS+ Y LEYG D +E+H  A+ A ++ L+VDDL+ATGGT+ A ++L+ ++G  V + A VI LP+L G   L
Sbjct:   12 IKQSIKTIPNYPKEGILFRDVTSLLENAAAYKAAIDLLVEHYRGQGFTKIVGTEARGFLFGAPLALELGIGFVPVRKPGKLPRATISQSYELEYGHDSLEIHTDAISANDKVLVVDDLLATGGTIEATVKLIRQLGGEVKDAAFVISLPDLGGEARL 168          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_SHEPC (Adenine phosphoribosyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=apt PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.199e-40
Identity = 75/157 (47.77%), Postives = 110/157 (70.06%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            I  +I+ IP++PK GI+F+D+T+LL +  A++  IDL VE Y+ +  + + G EARGF+FG P+AL +G  FVP+RKP KLP   IS+ Y LEYG D +E+H  A+ A ++ L+VDDL+ATGGT+ A ++L+ ++G  V + A VI LP+L G   L
Sbjct:   12 IKQSIKTIPNYPKEGILFRDVTSLLENAAAYKAAIDLLVEHYRGQGFTKIVGTEARGFLFGAPLALELGIGFVPVRKPGKLPRATISQSYELEYGHDSLEIHTDAISANDKVLVVDDLLATGGTIEATVKLIRQLGGEVKDAAFVISLPDLGGEARL 168          
The following BLAST results are available for this feature:
BLAST of FC930169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_VIBSL7.043e-4046.58Adenine phosphoribosyltransferase OS=Vibrio splend... [more]
APT_THEEB7.043e-4050.96Adenine phosphoribosyltransferase OS=Thermosynecho... [more]
APT_RHOP27.043e-4051.63Adenine phosphoribosyltransferase OS=Rhodopseudomo... [more]
APT_RHOFD7.043e-4050.32Adenine phosphoribosyltransferase OS=Rhodoferax fe... [more]
APT_RHIME7.043e-4053.55Adenine phosphoribosyltransferase OS=Rhizobium mel... [more]
APT_METNO7.043e-4052.44Adenine phosphoribosyltransferase OS=Methylobacter... [more]
APT_CYAP47.043e-4053.50Adenine phosphoribosyltransferase OS=Cyanothece sp... [more]
APT_SINMW9.199e-4053.55Adenine phosphoribosyltransferase OS=Sinorhizobium... [more]
APT_SHESW9.199e-4047.77Adenine phosphoribosyltransferase OS=Shewanella sp... [more]
APT_SHEPC9.199e-4047.77Adenine phosphoribosyltransferase OS=Shewanella pu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34004E06EF PostHarvC1 Citrus clementina cDNA clone C34004E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930169 ID=FC930169; Name=FC930169; organism=Citrus clementina; type=EST; length=730bp
GACTTCTTAACTCTTCAAACCTCTCCCTTCGCTTTGCATCTCAAACGCAG
ACACGACTCTCTCCCTGGATCGCCGCTCCCTCCTCTGTTCGCCTACCGTT
GAACCGCTCGCAAAATTACAGAATTGCACTCCCTCCTCTGCATTCCACCG
TGAGTGGTGACTCGACGCAACCTCAACAAATGGCTTCAGCTGACGTAAAA
GCACAAGACCCTCGAATCGCTGGGATTTCCTCAGCAATTCGTGTCATCCC
AGACTTCCCTAAACCAGGGATTATGTTTCAAGATATCACAACATTGCTTC
TTGATACCAAGGCTTTTAGAGATACTATTGATCTGTTCGTTGAGAGGTAC
AAGGACAAAAACATCTCTGTTGTTGCAGGTATTGAAGCTAGGGGTTTTAT
ATTTGGGCCTCCTATTGCATTGGCTATTGGGGCAAAGTTTGTTCCTATGA
GGAAACCTAAGAAGCTTCCTGGGGAGGTTATTTCCGAAGAGTATTCCTTG
GAATATGGAAAAGATGTAATGGAGATGCATGTAGGTGCTGTACAAGCAGG
GGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAACTGGTGGGACCTTGT
CTGCTGCAATCAGGCTACTTGAGCGAGTTGGGGTGCATGTGGTTGAGTGT
GCATGCGTGATTGAACTGCCAGAGCTAAAGGGTCGGGAAACGCTGGGAGA
GAAACACTATTTGTCTTGTAGCTAAACTTG
back to top