FC930169

Overview
NameFC930169
Unique NameFC930169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_FRATH (Adenine phosphoribosyltransferase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=apt PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.822e-35
Identity = 76/159 (47.80%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNI--SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            I S I  +PDFPKPGIMF+DIT LL D +  R T +   +  K+K I  +++AG E+RGFIFG  +A  +G  FVP+RKP KLP    S +Y LEYG D +E+H  A +  +  L+VDDL+ATGGT  A + L+E+    V     V+EL  L GRE L
Sbjct:    6 IKSKIAAVPDFPKPGIMFRDITPLLADPQGLRKTAEAMAQELKNKGIQPTIIAGTESRGFIFGVALAEVLGLGFVPVRKPGKLPRATYSVKYDLEYGSDSLEIHQDAFKVTDEVLVVDDLLATGGTAKATVDLIEKTQAKVAGLIFVMELDSLGGREVL 164          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_FRATF (Adenine phosphoribosyltransferase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=apt PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.822e-35
Identity = 76/159 (47.80%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNI--SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            I S I  +PDFPKPGIMF+DIT LL D +  R T +   +  K+K I  +++AG E+RGFIFG  +A  +G  FVP+RKP KLP    S +Y LEYG D +E+H  A +  +  L+VDDL+ATGGT  A + L+E+    V     V+EL  L GRE L
Sbjct:    6 IKSKIAAVPDFPKPGIMFRDITPLLADPQGLRKTAEAMAQELKNKGIQPTIIAGTESRGFIFGVALAEVLGLGFVPVRKPGKLPRATYSVKYDLEYGSDSLEIHQDAFKVTDEVLVVDDLLATGGTAKATVDLIEKTQAKVAGLIFVMELDSLGGREVL 164          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_CRIGR (Adenine phosphoribosyltransferase OS=Cricetulus griseus GN=APRT PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.822e-35
Identity = 74/167 (44.31%), Postives = 108/167 (64.67%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKN---ISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGEKHYLS 716
            ++  IR  PDFP PG++F+DI+ LL D  +FR +I L     K  +   I  +AG+++RGF+FGP +A  +G   V +RK  KLPG  +S  Y+LEYGK  +E+   A++ G++ ++VDDL+ATGGT+ AA  LL ++   VVEC  ++EL  LKGRE LG   + S
Sbjct:    9 VAQRIRSFPDFPIPGVLFRDISPLLKDPASFRASIRLLASHLKSTHGGKIDYIAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTVSASYALEYGKAELEIQKDALEPGQKVVVVDDLLATGGTMCAACELLGQLQAEVVECVSLVELTSLKGREKLGSVPFFS 175          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_CALS8 (Adenine phosphoribosyltransferase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=apt PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.822e-35
Identity = 74/157 (47.13%), Postives = 104/157 (66.24%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            +    R + +FPK GI F DITT+L D  AF+  ID  V   KD +  ++ G E+RGFIFG P+A  +    V +RK  KLP + +S EY LEYGKD++EMH+ A+Q G++ +I+DDL+ATGGT  + I+L+E++G  VV  A ++EL  L GRE L
Sbjct:    3 LKEKFRHVLNFPKEGIDFIDITTVLQDKDAFKYAIDSLVNLVKDLDFDLIVGPESRGFIFGAPVAYVLNKGLVLVRKKGKLPYKTVSVEYELEYGKDILEMHIDAIQPGQKVVIIDDLLATGGTTLSNIKLVEKLGGKVVGIAYLVELTYLNGRENL 159          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_SYNPW (Adenine phosphoribosyltransferase OS=Synechococcus sp. (strain WH7803) GN=apt PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.910e-35
Identity = 76/155 (49.03%), Postives = 100/155 (64.52%), Query Frame = 3
Query:  237 IRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGE 701
            +R IPDFPKPGI+F+DIT LL D   + + I   V         ++ GIE+RGFI G  +A  +G  FVP+RKP KLPGEVI  +Y+LEYG D +E+H  A+    + L+VDDL+ATGGT SA+  L+ + G  +V C  VIEL +L GR  L E
Sbjct:    7 VRDIPDFPKPGILFRDITPLLRDPAGWHEVIQRLVAVCDRWQPDLIVGIESRGFIVGTALATQLGKGFVPVRKPGKLPGEVIGIDYTLEYGSDRLEIHADALSDHPKVLLVDDLLATGGTASASAELVTKAGGELVGCGFVIELADLAGRAKLPE 161          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_NITOC (Adenine phosphoribosyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=apt PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 8.910e-35
Identity = 75/159 (47.17%), Postives = 102/159 (64.15%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGE 701
            + + IR IPDFPKPG++F+DIT L+ D    R  +   +  + +++I+ V GIEARGFIFG  +A  +G  F+P+RK  KLP EV S  Y LEYG   +E H  ++  G+  L+VDDL+ATGGT  A+  L+E +G  V  CA VIEL  L GRE L +
Sbjct:    4 LKTKIRDIPDFPKPGVLFKDITPLVGDPATLRLAVHQLLHPFLEQDITAVGGIEARGFIFGALVAWELGVGFIPLRKSGKLPYEVRSISYQLEYGSASLEAHTDSLGPGDNVLLVDDLLATGGTAKASCELVESLGATVAACAFVIELDFLHGRERLSD 162          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_MACCJ (Adenine phosphoribosyltransferase OS=Macrococcus caseolyticus (strain JCSC5402) GN=apt PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.910e-35
Identity = 75/153 (49.02%), Postives = 102/153 (66.67%), Query Frame = 3
Query:  237 IRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            I  + D+PKPG+ F+DITT++ +  A++   D  VE  K+K + +V G EARGFI G P+A A+   F P+RK  KLP EVIS EY LEYG +V+ MH  A++ G+R LI DDL+ATGGT+ A I+L+E +G  V   A +I+L  L G E L
Sbjct:    7 ITQVKDWPKPGVNFKDITTIMDNGAAYKYATDQIVEYAKEKQVDIVVGPEARGFIIGCPVAYAMNIGFAPVRKKGKLPREVISYEYELEYGTNVLTMHKDAIKPGQRVLITDDLLATGGTIEATIKLVESLGGIVAGIAFIIDLKYLNGMEKL 159          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_FRATT (Adenine phosphoribosyltransferase OS=Francisella tularensis subsp. tularensis GN=apt PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.910e-35
Identity = 77/159 (48.43%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNI--SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            I S I  +PDFPKPGIMF+DIT LL D +  R T +   +  K+K I  ++VAG E+RGFIFG  +A  +G  FVP+RKP KLP    S +Y LEYG D +E+H  A +  +  L+VDDL+ATGGT  A + L+E+    V     V+EL  L GRE L
Sbjct:    6 IKSKIAAVPDFPKPGIMFRDITPLLADPQGLRKTAEAMAQELKNKGIQPTIVAGTESRGFIFGVALAEVLGLGFVPVRKPGKLPRATYSVKYDLEYGSDSLEIHQDAFKVTDEVLVVDDLLATGGTAKATVDLIEKTQAKVAGLIFVMELDGLGGREVL 164          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_FRATN (Adenine phosphoribosyltransferase OS=Francisella tularensis subsp. novicida (strain U112) GN=apt PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.910e-35
Identity = 77/159 (48.43%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNI--SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            I S I  +PDFPKPGIMF+DIT LL D +  R T +   +  K+K I  ++VAG E+RGFIFG  +A  +G  FVP+RKP KLP    S +Y LEYG D +E+H  A +  +  L+VDDL+ATGGT  A + L+E+    V     V+EL  L GRE L
Sbjct:    6 IKSKIAAVPDFPKPGIMFRDITPLLADPQGLRKTAEAMAQELKNKGIQPTIVAGTESRGFIFGVALAEVLGLGFVPVRKPGKLPRATYSVKYDLEYGSDSLEIHQDAFKVTDEVLVVDDLLATGGTAKATVDLIEKTQAKVAGLIFVMELDGLGGREVL 164          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_FRATM (Adenine phosphoribosyltransferase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=apt PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.910e-35
Identity = 77/159 (48.43%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNI--SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            I S I  +PDFPKPGIMF+DIT LL D +  R T +   +  K+K I  ++VAG E+RGFIFG  +A  +G  FVP+RKP KLP    S +Y LEYG D +E+H  A +  +  L+VDDL+ATGGT  A + L+E+    V     V+EL  L GRE L
Sbjct:    6 IKSKIAAVPDFPKPGIMFRDITPLLADPQGLRKTAEAMAQELKNKGIQPTIVAGTESRGFIFGVALAEVLGLGFVPVRKPGKLPRATYSVKYDLEYGSDSLEIHQDAFKVTDEVLVVDDLLATGGTAKATVDLIEKTQAKVAGLIFVMELDGLGGREVL 164          
The following BLAST results are available for this feature:
BLAST of FC930169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_FRATH6.822e-3547.80Adenine phosphoribosyltransferase OS=Francisella t... [more]
APT_FRATF6.822e-3547.80Adenine phosphoribosyltransferase OS=Francisella t... [more]
APT_CRIGR6.822e-3544.31Adenine phosphoribosyltransferase OS=Cricetulus gr... [more]
APT_CALS86.822e-3547.13Adenine phosphoribosyltransferase OS=Caldicellulos... [more]
APT_SYNPW8.910e-3549.03Adenine phosphoribosyltransferase OS=Synechococcus... [more]
APT_NITOC8.910e-3547.17Adenine phosphoribosyltransferase OS=Nitrosococcus... [more]
APT_MACCJ8.910e-3549.02Adenine phosphoribosyltransferase OS=Macrococcus c... [more]
APT_FRATT8.910e-3548.43Adenine phosphoribosyltransferase OS=Francisella t... [more]
APT_FRATN8.910e-3548.43Adenine phosphoribosyltransferase OS=Francisella t... [more]
APT_FRATM8.910e-3548.43Adenine phosphoribosyltransferase OS=Francisella t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34004E06EF PostHarvC1 Citrus clementina cDNA clone C34004E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930169 ID=FC930169; Name=FC930169; organism=Citrus clementina; type=EST; length=730bp
GACTTCTTAACTCTTCAAACCTCTCCCTTCGCTTTGCATCTCAAACGCAG
ACACGACTCTCTCCCTGGATCGCCGCTCCCTCCTCTGTTCGCCTACCGTT
GAACCGCTCGCAAAATTACAGAATTGCACTCCCTCCTCTGCATTCCACCG
TGAGTGGTGACTCGACGCAACCTCAACAAATGGCTTCAGCTGACGTAAAA
GCACAAGACCCTCGAATCGCTGGGATTTCCTCAGCAATTCGTGTCATCCC
AGACTTCCCTAAACCAGGGATTATGTTTCAAGATATCACAACATTGCTTC
TTGATACCAAGGCTTTTAGAGATACTATTGATCTGTTCGTTGAGAGGTAC
AAGGACAAAAACATCTCTGTTGTTGCAGGTATTGAAGCTAGGGGTTTTAT
ATTTGGGCCTCCTATTGCATTGGCTATTGGGGCAAAGTTTGTTCCTATGA
GGAAACCTAAGAAGCTTCCTGGGGAGGTTATTTCCGAAGAGTATTCCTTG
GAATATGGAAAAGATGTAATGGAGATGCATGTAGGTGCTGTACAAGCAGG
GGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAACTGGTGGGACCTTGT
CTGCTGCAATCAGGCTACTTGAGCGAGTTGGGGTGCATGTGGTTGAGTGT
GCATGCGTGATTGAACTGCCAGAGCTAAAGGGTCGGGAAACGCTGGGAGA
GAAACACTATTTGTCTTGTAGCTAAACTTG
back to top