FC930219

Overview
NameFC930219
Unique NameFC930219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 1
Query:  175 LIDFEELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV 528
            ++ F+ +   +F++AV AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y++AQCLGAI G G +
Sbjct:   23 MVAFKGVWTQAFWKAVSAEFLATLIFVLLGVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGIL 133          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 1
Query:  175 LIDFEELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV 528
            ++ F+ +   +F++AV AEF+A            I +  + +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +
Sbjct:   23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSLGSTINWGGKENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL 133          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.850e-12
Identity = 38/102 (37.25%), Postives = 51/102 (50.00%), Query Frame = 1
Query:  214 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC 519
            +A +AEFIA            I +   T    N       G++ IA A    +F+ V   A  SGGH+NPAVTFGL +G  ++++  L Y VAQ LGA   C
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAFGQLT----NGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVAC 116          

HSP 2 Score: 29.261 bits (64), Expect = 3.850e-12
Identity = 15/33 (45.45%), Postives = 22/33 (66.67%), Query Frame = 3
Query:  606 GLGAEIIGTFVLVYTVF-SATDPKRSARDSHVP 701
            G+  EI+ TF LVYTV+ +A DPK+ +  +  P
Sbjct:  142 GVVFEIVITFALVYTVYATAADPKKGSLGTIAP 174          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 3.850e-12
Identity = 37/107 (34.58%), Postives = 54/107 (50.47%), Query Frame = 1
Query:  214 RAVIAEFIAXXXXXXXXXXXXIGYKSQT-DPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK 531
            +A +AEFIA            I Y   T D  L+       G++ +A A    +F+ V   A ISGGH+NPAVT GL +G  ++++    Y +AQ LG+   C  +K
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDP-----AGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLK 120          

HSP 2 Score: 30.0314 bits (66), Expect = 3.850e-12
Identity = 16/33 (48.48%), Postives = 22/33 (66.67%), Query Frame = 3
Query:  606 GLGAEIIGTFVLVYTVF-SATDPKRSARDSHVP 701
            G+  EII TF LVYTV+ +A DPK+ +  +  P
Sbjct:  142 GVVMEIIITFALVYTVYATAADPKKGSLGTIAP 174          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.850e-12
Identity = 37/107 (34.58%), Postives = 54/107 (50.47%), Query Frame = 1
Query:  214 RAVIAEFIAXXXXXXXXXXXXIGYKSQT-DPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK 531
            +A +AEFIA            I Y   T D  L+       G++ +A A    +F+ V   A ISGGH+NPAVT GL +G  ++++    Y +AQ LG+   C  +K
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDP-----AGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLK 120          

HSP 2 Score: 30.0314 bits (66), Expect = 3.850e-12
Identity = 16/33 (48.48%), Postives = 22/33 (66.67%), Query Frame = 3
Query:  606 GLGAEIIGTFVLVYTVF-SATDPKRSARDSHVP 701
            G+  EII TF LVYTV+ +A DPK+ +  +  P
Sbjct:  142 GVVMEIIITFALVYTVYATAADPKKGSLGTIAP 174          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 41/118 (34.75%), Postives = 63/118 (53.39%), Query Frame = 1
Query:  175 LIDFEELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV 528
            ++ F+ +   +F++AV AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +
Sbjct:   23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL 133          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 41/118 (34.75%), Postives = 63/118 (53.39%), Query Frame = 1
Query:  175 LIDFEELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV 528
            ++ F+ +   +F++AV AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +
Sbjct:   26 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL 136          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 44/109 (40.37%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  190 ELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICG 516
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA+ YMVAQ LGA+ G
Sbjct:    3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAG 100          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 1
Query:  175 LIDFEELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV 528
            ++ F+ +   +F++AV AEF+A            I +     P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +
Sbjct:   23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL 133          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.092e-11
Identity = 36/108 (33.33%), Postives = 55/108 (50.93%), Query Frame = 1
Query:  205 SFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV 528
            +F +AV AEF+A            + + S               +L I+ AFG  I  +      +SGGH+NPA+T  L +G ++SL+RA+ Y+VAQ +GAI G   +
Sbjct:    9 AFLKAVFAEFLATLIFVFFGLGSALKWPSAMP-----------SVLQISLAFGLAIGTMAQALGPVSGGHMNPAITLALLVGNQISLLRAVFYLVAQLVGAIAGAAIL 105          

HSP 2 Score: 26.9498 bits (58), Expect = 1.092e-11
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 3
Query:  600 GTGLGAEIIGTFVLVYTVFSATDPKRSA 683
            G  + AE+I TF L   VFS+TD +R++
Sbjct:  129 GQAVVAEMILTFQLALCVFSSTDSRRTS 156          
The following BLAST results are available for this feature:
BLAST of FC930219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
AQP4_MOUSE2.648e-1234.75Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP4_DIPME3.458e-1234.75Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
TIP22_MAIZE3.850e-1237.25Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP2_TOBAC3.850e-1234.58Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_TOBAC3.850e-1234.58Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
AQP4_RAT4.516e-1234.75Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_NOTAL4.516e-1234.75Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
MIP_BOVIN7.703e-1240.37Lens fiber major intrinsic protein OS=Bos taurus G... [more]
AQP4_HUMAN1.006e-1134.75Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP5_SHEEP1.092e-1133.33Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34005A09EF PostHarvC1 Citrus clementina cDNA clone C34005A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930219 ID=FC930219; Name=FC930219; organism=Citrus clementina; type=EST; length=702bp
CATCATTAAACTCTGTAGCAACACAACAGTCGTAGCTCTTGTTTCTCCCT
CTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAAATGGGGAAGGATG
TTGAAGTTGCTGAGCAGCAAGGCGGCGGCGGCGAGTTCTCAGCCAAGGAC
TACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTGGGCAG
GTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATCGCTACGCTTTTGT
TTCTTTATGTTACCGTCTTGACTGTGATTGGATACAAGAGCCAGACTGAT
CCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCATTCTTGGCATCGC
TTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTACTGCACAGCCGGTA
TTTCTGGTGGACATATCAACCCGGCTGTGACATTCGGACTGTTCTTGGGG
CGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGGTAGCACAGTGCTT
GGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATCATACT
ACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGATGGATACACAAGG
GCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGTTCTTGTCTACACT
GTTTTCTCTGCCACTGATCCTAAGAGGAGCGCAAGAGACTCCCATGTTCC
GG
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