FC930244

Overview
NameFC930244
Unique NameFC930244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH19_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 19 OS=Arabidopsis thaliana GN=XTH19 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13
Identity = 43/122 (35.25%), Postives = 62/122 (50.82%), Query Frame = 1
Query:  268 HCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            H      ++L+ D   G+ ++S   FLYG     ++   GN++G     YL S     + DEIDFEFLG        + TN YT G+G++E+   L FD +  FH Y I W P  I + +DG
Sbjct:   40 HDNQGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKS--PGTTWDEIDFEFLGNISGHPYTLHTNVYTKGSGDKEQQFHLWFDPTANFHTYCITWNPQRIIFTVDG 159          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.551e-13
Identity = 42/117 (35.90%), Postives = 62/117 (52.99%), Query Frame = 1
Query:  280 SNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            +  + LT D   G+ + S   +L+G FS  ++   GN++G   + YLSS EGD   DEID EF+G    +  ++ TN +  G G +E    L FD +  FH Y I W P  I + +D
Sbjct:   50 TQQVALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYLSSGEGD-GHDEIDIEFMGNLSGNPYVMNTNVWANGDGKKEHQFYLWFDPTADFHTYKIIWNPQNIIFQVD 165          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 41/116 (35.34%), Postives = 64/116 (55.17%), Query Frame = 1
Query:  283 NSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKT---IVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            N ++L+ D   G+ ++S   +L+G     ++   GN++G     YLSS     + DEIDFEFLG +     ++ TN +  G G+RE+   L FD ++ FH Y I W P  I +L+D
Sbjct:   48 NMLSLSLDQVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGA--THDEIDFEFLGNETGKPYVLHTNVFAQGKGDREQQFYLWFDPTKNFHTYSIVWRPQHIIFLVD 161          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH13_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = 1
Query:  289 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            +T T D   G+ ++S   +L+G     ++   GN++G     YLSS    ++ DEIDFEFLG       ++ TN +T G GNRE    L FD +  FH Y + W P  I +L+DG
Sbjct:   48 LTCTLDKISGSGFQSKKEYLFGKIDMKMKLVAGNSAGTVTAYYLSSK--GETWDEIDFEFLGNVTGQPYVLHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDG 160          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 43/116 (37.07%), Postives = 63/116 (54.31%), Query Frame = 1
Query:  283 NSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            + + L  D   G  ++S   +L+G FS  I+   G+++G     YLSS   +   DEIDFEFLG       I+QTN +T G GNRE+  +L FD S+ +H Y + W    I + +D
Sbjct:   52 SEVHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYLSSQNSE--HDEIDFEFLGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVD 165          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  289 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKT---IVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            ++L+ D   G+ ++S   +L+G     ++   GN++G     YLSS EG  + DEIDFEFLG +     ++ TN +  G GNRE+   L FD ++ FH Y + W P  I +++D
Sbjct:   49 LSLSLDRVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSS-EGP-THDEIDFEFLGNETGKPYVLHTNVFAQGKGNREQQFYLWFDPTKNFHTYSLVWRPQHIIFMVD 160          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH8_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.755e-12
Identity = 41/119 (34.45%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  277 DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEG-DKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            D     L+ D+  G  +++   + +G FS  ++   G+++G+    Y+ S  G    +DEIDFEFLG       I+QTN Y  GTGNRE  H L FD ++ +H Y I W    + + +D
Sbjct:   43 DGEIWNLSLDNDTGCGFQTKHMYRFGWFSMKLKLVGGDSAGVVTAYYMCSENGAGPERDEIDFEFLGNRTGQPYIIQTNVYKNGTGNREMRHSLWFDPTKDYHTYSILWNNHQLVFFVD 161          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.755e-12
Identity = 52/163 (31.90%), Postives = 79/163 (48.47%), Query Frame = 1
Query:  151 SSNSVVTLELEMADPVVQSLHQTEPIK---EIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            S N   TL L +   + Q +  + P K   +  I ++    T      +I L  D   G  + S  ++L+G  S  I+   G+++G     Y++S + D  +DE+DFEFLG        VQTN +  G G+RE+  +L FD S  FHEY I W    I + +D
Sbjct:    8 SRNVFYTLSLCLFAALYQPV-MSRPAKFEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNS-DTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDPSRDFHEYAISWNHLRIVFYVD 168          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 42/114 (36.84%), Postives = 58/114 (50.88%), Query Frame = 1
Query:  289 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDK---TIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            + L  D   G  + S   +  G F   I+ P GNT G+    YL+S  G    DEIDFEFLG +      +QTN +  G GNREE   L F+ ++ +H Y + W P  I + +D
Sbjct:   57 VDLYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTSKGG--GHDEIDFEFLGNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVD 168          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 1
Query:  289 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            +T T D   G+ ++S   +L+G     ++   GN++G     YLSS     + DEIDFEFLG        + TN +T G G+RE    L FD +  FH Y + W P  I +L+DG
Sbjct:   52 LTCTLDKVSGSGFQSKKEYLFGKIDMKLKLVAGNSAGTVTAYYLSSK--GTAWDEIDFEFLGNRTGHPYTIHTNVFTGGKGDREMQFRLWFDPTADFHTYTVHWNPVNIIFLVDG 164          
The following BLAST results are available for this feature:
BLAST of FC930244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH19_ARATH4.250e-1335.25Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ORYSJ5.551e-1335.90Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH15_ARATH1.237e-1235.34Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH13_ARATH1.237e-1237.39Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH5_ARATH1.615e-1237.07Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH16_ARATH1.615e-1235.96Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ARATH2.755e-1234.45Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH2.755e-1231.90Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH3_ARATH3.598e-1236.84Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH14_ARATH6.137e-1236.52Xyloglucan endotransglucosylase/hydrolase protein ... [more]

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Properties
Property NameValue
Genbank descriptionC34005C12EF PostHarvC1 Citrus clementina cDNA clone C34005C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930244 ID=FC930244; Name=FC930244; organism=Citrus clementina; type=EST; length=624bp
AGAAAAGGTTGTTCGTTATGATCAGATGGTGGATAGGCAAGGCCCGTGAA
TCGTTTTTAGAAATGCTTAGGAGCAGTGGGCTCACTGTAAAAAGTCTGGT
TTCTCCTTCAGTTGACTTCACTTTCTTTCTTCCGTAAATTGAAATCGGTA
AGCAGCAATTCTGTCGTGACCCTTGAACTTGAAATGGCGGATCCAGTTGT
CCAGAGTCTCCATCAAACTGAACCCATAAAAGAAATCGCCATAGATTACA
CCCCGGAAGCATGCACTCACTGCGCAGACTCCAATTCGATCACACTCACC
TTCGATCACCGCGGCGGAGCCAGGTGGCGCTCCACCACTCGCTTCCTCTA
CGGCACCTTCAGCTCCCTGATCCAGTGCCCCAAAGGCAACACTAGTGGCC
TCAACTTCAACATCTACCTTTCTTCTCTAGAAGGCGACAAATCCCAAGAC
GAAATCGACTTTGAATTCCTTGGCAAGGACAAGACTATCGTTCAAACCAA
TTATTACACTACAGGAACCGGGAATAGAGAGGAGATTCATGATCTGGGGT
TCGATTGTTCTGAAGGATTTCATGAGTACGTGATCAAGTGGGGTCCAGAT
TTGATCCAGTGGTTGATTGATGGG
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