FC930244

Overview
NameFC930244
Unique NameFC930244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 44/115 (38.26%), Postives = 60/115 (52.17%), Query Frame = 1
Query:  295 LTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEG-DKSQDEIDFEFLG---KDKTIVQTNYYTTGT--GNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            LT D   GA   S  ++ YG FS+ ++ P G  SG+    YLS+ E   KS DEID E LG   +D   +QTN Y  G+    REE     FD ++ FH+Y + W      +L+D
Sbjct:   65 LTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVD 179          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 46/125 (36.80%), Postives = 67/125 (53.60%), Query Frame = 1
Query:  277 DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKS-QDEIDFEFL----GKDKTIVQTNYYTTGTGN-----REEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            D N++T+  D   G+ ++S   F  G F + I+   G T+G+  ++YLS+ E      DE+D EFL    GK  T+ QTN Y  G+G+     RE    L FD ++ FH Y I W P  I +L+D
Sbjct:   59 DQNALTIWLDRTSGSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTL-QTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVD 182          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.047e-11
Identity = 48/123 (39.02%), Postives = 65/123 (52.85%), Query Frame = 1
Query:  277 DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGD---KSQDEIDFEFLGK---DKTIVQTNYYTTGTGN--REEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            D  S+ L  D   G+ + S++ + +G FSSLI+ P   T+G+    Y S+  GD   K  DE+D EFLG         QTN Y  G+ N  REE + L FD S+ FH Y I W P  I + +D
Sbjct:   58 DDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSN--GDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVD 178          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 43/116 (37.07%), Postives = 62/116 (53.45%), Query Frame = 1
Query:  283 NSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            + I L  D   G  ++S   +L+G FS  I+   G+++G     YLSS   +   DEIDFEFLG       I+QTN +T G G+RE+   L FD ++ +H Y I W    I + +D
Sbjct:   53 SDIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAE--HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVD 166          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11
Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = 1
Query:  283 NSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            + I L  D   G  ++S   +L+G FS  I+   G+++G     YLSS   +   DEIDFEFLG       I+QTN +T G G+RE+   L FD +  +H Y + W    I + +D
Sbjct:   51 SEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKLVPGDSAGTVTAFYLSSTNAE--HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTTQYHRYSVLWNMYQIVFYVD 164          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  289 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            + L+ D   G  +++   +L+G FS  I+   G+++G     YLSS   +   DEIDFEFLG       I+QTN ++ G G+RE+   L FD ++ +H Y + W   +I + +D
Sbjct:   54 VQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQNSE--HDEIDFEFLGNRTGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNLYMIAFFVD 165          
The following BLAST results are available for this feature:
BLAST of FC930244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH33_ARATH8.015e-1238.26Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH8.015e-1236.80Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH1.047e-1139.02Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_SOYBN3.978e-1137.07Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN6.785e-1136.21Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_WHEAT8.862e-1134.21Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC34005C12EF PostHarvC1 Citrus clementina cDNA clone C34005C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930244 ID=FC930244; Name=FC930244; organism=Citrus clementina; type=EST; length=624bp
AGAAAAGGTTGTTCGTTATGATCAGATGGTGGATAGGCAAGGCCCGTGAA
TCGTTTTTAGAAATGCTTAGGAGCAGTGGGCTCACTGTAAAAAGTCTGGT
TTCTCCTTCAGTTGACTTCACTTTCTTTCTTCCGTAAATTGAAATCGGTA
AGCAGCAATTCTGTCGTGACCCTTGAACTTGAAATGGCGGATCCAGTTGT
CCAGAGTCTCCATCAAACTGAACCCATAAAAGAAATCGCCATAGATTACA
CCCCGGAAGCATGCACTCACTGCGCAGACTCCAATTCGATCACACTCACC
TTCGATCACCGCGGCGGAGCCAGGTGGCGCTCCACCACTCGCTTCCTCTA
CGGCACCTTCAGCTCCCTGATCCAGTGCCCCAAAGGCAACACTAGTGGCC
TCAACTTCAACATCTACCTTTCTTCTCTAGAAGGCGACAAATCCCAAGAC
GAAATCGACTTTGAATTCCTTGGCAAGGACAAGACTATCGTTCAAACCAA
TTATTACACTACAGGAACCGGGAATAGAGAGGAGATTCATGATCTGGGGT
TCGATTGTTCTGAAGGATTTCATGAGTACGTGATCAAGTGGGGTCCAGAT
TTGATCCAGTGGTTGATTGATGGG
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