FC930261
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_HALLT (Peptide chain release factor subunit 1 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=prf1 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19 Identity = 59/182 (32.42%), Postives = 89/182 (48.90%), Query Frame = 2 Query: 134 ADGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWKK 673 +D QE + G+GT ++++ +P QVS V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NG+V+++G I G+ VT E P +P+ + Y CD+ F T+ L +LE FG IV+D G L G E + S+ P +K Sbjct: 3 SDAQEASDDRRKYEFRKVIEELRDFEGSGTQLVTIYIPEDRQVSDVVAHVTQEHSEASNIKSKQTRTAVQDALTSIKDRLRYYDTFPPENGMVIFSGAIDAGGGQTDMVTRTLESPPQPVESFRYHCDSAFLTEPLEHMLEDSGLFGLIVLDRREANVGWLKGKRVEPVKSASSLVPGKQRK 184
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF12_METAC (Peptide chain release factor subunit 1-2 OS=Methanosarcina acetivorans GN=prf12 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18 Identity = 54/148 (36.49%), Postives = 81/148 (54.73%), Query Frame = 2 Query: 212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREV---LHSSV 646 G T +ISL +PP Q+S VTK L +E ASNI S++ R +V A+ S +L+ +K+P NG+V +TGT+ T + V P P+ +Y CD+ F+ + L E+L +G +++D G L G EV LHS+V Sbjct: 24 GRSTELISLYIPPDKQISDVTKHLREEHEQASNIISKLIRNNVQEALHSLLAKLRSLHKIPENGIVYFTGTVDTGANRTGMVNEVLFPPEPVADYIYRCDSVFYLEPLEEMLRECTTYGLLLLDLREATIGMLVGRQTEVIKHLHSTV 171
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_HALSA (Peptide chain release factor subunit 1 OS=Halobacterium salinarium GN=prf1 PE=3 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18 Identity = 54/156 (34.62%), Postives = 87/156 (55.77%), Query Frame = 2 Query: 212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWKK 673 G+GT ++++ +PP Q+S V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NG+V+++G + + G+ VT E P +PI + Y CD+ F T+ L E+L +G IV+D + G L G + + S+ P +K Sbjct: 29 GSGTQLVTIYIPPDKQISDVVAHVTQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTFPPDNGMVVFSGAVDSGGGRTDMVTEVLESPPQPIESFRYHCDSAFLTEPLAEMLGDKGLYGLIVLDRRESNVGWLKGKRVQPVKSAESLVPGKQRK 184
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_HALS3 (Peptide chain release factor subunit 1 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=prf1 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18 Identity = 54/156 (34.62%), Postives = 87/156 (55.77%), Query Frame = 2 Query: 212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWKK 673 G+GT ++++ +PP Q+S V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NG+V+++G + + G+ VT E P +PI + Y CD+ F T+ L E+L +G IV+D + G L G + + S+ P +K Sbjct: 29 GSGTQLVTIYIPPDKQISDVVAHVTQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTFPPDNGMVVFSGAVDSGGGRTDMVTEVLESPPQPIESFRYHCDSAFLTEPLAEMLGDKGLYGLIVLDRRESNVGWLKGKRVQPVKSAESLVPGKQRK 184
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_METVS (Peptide chain release factor subunit 1 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=prf1 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.043e-18 Identity = 50/155 (32.26%), Postives = 83/155 (53.55%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDD-GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWK 670 RG GT +IS+ +P ++S +++ L E +SNIKS+ ++V AI QRLKL + G++++ G I G EK EP P+ +Y CD++F+T++L + ++ + +G I++D N GT+ G T VL P +K Sbjct: 23 RGKGTELISVYVPAGRRLSDISQHLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEKGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFIYRCDSEFYTESLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVLKKLTSGVPGKFK 177
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_METMP (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis GN=prf1 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.006e-17 Identity = 49/155 (31.61%), Postives = 82/155 (52.90%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDD-GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWK 670 +G GT +IS+ +P ++S +++ L E +SNIKS+ ++V AI QRLKL + G++++ G I G EK EP P+ +Y CD+ F+TD L + ++ ++ +G I++D N GT+ G T +L P +K Sbjct: 23 KGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDNEVYGVILVDRNEATIGTVRGKTITILKKLTSGVPGKFK 177
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_METM7 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=prf1 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.006e-17 Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDD-GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWK 670 +G GT +IS+ +P ++S +++ L E +SNIKS+ ++V AI QRLKL + G++++ G I G EK EP P+ +Y CD+ F+TD L + ++ + +G I++D N GT+ G T VL P +K Sbjct: 23 KGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVLKKLTSGVPGKFK 177
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_METM6 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=prf1 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.006e-17 Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDD-GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWK 670 +G GT +IS+ +P ++S +++ L E +SNIKS+ ++V AI QRLKL + G++++ G I G EK EP P+ +Y CD+ F+TD L + ++ + +G I++D N GT+ G T VL P +K Sbjct: 23 KGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVLKKLTSGVPGKFK 177
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_METM5 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=prf1 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.006e-17 Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDD-GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWK 670 +G GT +IS+ +P ++S +++ L E +SNIKS+ ++V AI QRLKL + G++++ G I G EK EP P+ +Y CD+ F+TD L + ++ + +G I++D N GT+ G T VL P +K Sbjct: 23 KGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVLKKLTSGVPGKFK 177
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_HALMA (Peptide chain release factor subunit 1 OS=Haloarcula marismortui GN=prf1 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.422e-17 Identity = 56/157 (35.67%), Postives = 83/157 (52.87%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWKK 673 +G+GT ++S+ +P +S V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NGLV+++G T G+ VT E P PI + Y CD++F T+ L +L FG IV+D G L G E + S+ P +K Sbjct: 28 QGSGTQLVSIYIPEGKLISDVVAHVTQEHSEASNIKSKDTRTAVQDALTSIKDRLRYYDVRPPDNGLVVFSGAFDTGGGRTDMVTKVLESPPDPIESFRYHCDSEFLTEPLEHMLADKGLFGLIVLDRREANVGWLKGKRVEPVKSASSLVPGKQRK 184 The following BLAST results are available for this feature:
BLAST of FC930261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930261 ID=FC930261; Name=FC930261; organism=Citrus clementina; type=EST; length=689bpback to top |