FC930261

Overview
NameFC930261
Unique NameFC930261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_HALLT (Peptide chain release factor subunit 1 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=prf1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19
Identity = 59/182 (32.42%), Postives = 89/182 (48.90%), Query Frame = 2
Query:  134 ADGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWKK 673
            +D QE   +                 G+GT ++++ +P   QVS V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NG+V+++G I    G+   VT   E P +P+ +  Y CD+ F T+ L  +LE    FG IV+D      G L G   E + S+    P   +K
Sbjct:    3 SDAQEASDDRRKYEFRKVIEELRDFEGSGTQLVTIYIPEDRQVSDVVAHVTQEHSEASNIKSKQTRTAVQDALTSIKDRLRYYDTFPPENGMVIFSGAIDAGGGQTDMVTRTLESPPQPVESFRYHCDSAFLTEPLEHMLEDSGLFGLIVLDRREANVGWLKGKRVEPVKSASSLVPGKQRK 184          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF12_METAC (Peptide chain release factor subunit 1-2 OS=Methanosarcina acetivorans GN=prf12 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 54/148 (36.49%), Postives = 81/148 (54.73%), Query Frame = 2
Query:  212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREV---LHSSV 646
            G  T +ISL +PP  Q+S VTK L +E   ASNI S++ R +V  A+ S   +L+  +K+P NG+V +TGT+ T   +   V     P  P+   +Y CD+ F+ + L E+L     +G +++D      G L G   EV   LHS+V
Sbjct:   24 GRSTELISLYIPPDKQISDVTKHLREEHEQASNIISKLIRNNVQEALHSLLAKLRSLHKIPENGIVYFTGTVDTGANRTGMVNEVLFPPEPVADYIYRCDSVFYLEPLEEMLRECTTYGLLLLDLREATIGMLVGRQTEVIKHLHSTV 171          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_HALSA (Peptide chain release factor subunit 1 OS=Halobacterium salinarium GN=prf1 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18
Identity = 54/156 (34.62%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWKK 673
            G+GT ++++ +PP  Q+S V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NG+V+++G + +  G+   VT   E P +PI +  Y CD+ F T+ L E+L     +G IV+D   +  G L G   + + S+    P   +K
Sbjct:   29 GSGTQLVTIYIPPDKQISDVVAHVTQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTFPPDNGMVVFSGAVDSGGGRTDMVTEVLESPPQPIESFRYHCDSAFLTEPLAEMLGDKGLYGLIVLDRRESNVGWLKGKRVQPVKSAESLVPGKQRK 184          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_HALS3 (Peptide chain release factor subunit 1 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=prf1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18
Identity = 54/156 (34.62%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWKK 673
            G+GT ++++ +PP  Q+S V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NG+V+++G + +  G+   VT   E P +PI +  Y CD+ F T+ L E+L     +G IV+D   +  G L G   + + S+    P   +K
Sbjct:   29 GSGTQLVTIYIPPDKQISDVVAHVTQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTFPPDNGMVVFSGAVDSGGGRTDMVTEVLESPPQPIESFRYHCDSAFLTEPLAEMLGDKGLYGLIVLDRRESNVGWLKGKRVQPVKSAESLVPGKQRK 184          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_METVS (Peptide chain release factor subunit 1 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=prf1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.043e-18
Identity = 50/155 (32.26%), Postives = 83/155 (53.55%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDD-GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWK 670
            RG GT +IS+ +P   ++S +++ L  E   +SNIKS+   ++V  AI    QRLKL  +    G++++ G I     G EK      EP  P+   +Y CD++F+T++L + ++  + +G I++D N    GT+ G T  VL       P  +K
Sbjct:   23 RGKGTELISVYVPAGRRLSDISQHLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEKGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFIYRCDSEFYTESLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVLKKLTSGVPGKFK 177          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_METMP (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis GN=prf1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.006e-17
Identity = 49/155 (31.61%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDD-GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWK 670
            +G GT +IS+ +P   ++S +++ L  E   +SNIKS+   ++V  AI    QRLKL  +    G++++ G I     G EK      EP  P+   +Y CD+ F+TD L + ++ ++ +G I++D N    GT+ G T  +L       P  +K
Sbjct:   23 KGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDNEVYGVILVDRNEATIGTVRGKTITILKKLTSGVPGKFK 177          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_METM7 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=prf1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.006e-17
Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDD-GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWK 670
            +G GT +IS+ +P   ++S +++ L  E   +SNIKS+   ++V  AI    QRLKL  +    G++++ G I     G EK      EP  P+   +Y CD+ F+TD L + ++  + +G I++D N    GT+ G T  VL       P  +K
Sbjct:   23 KGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVLKKLTSGVPGKFK 177          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_METM6 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=prf1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.006e-17
Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDD-GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWK 670
            +G GT +IS+ +P   ++S +++ L  E   +SNIKS+   ++V  AI    QRLKL  +    G++++ G I     G EK      EP  P+   +Y CD+ F+TD L + ++  + +G I++D N    GT+ G T  VL       P  +K
Sbjct:   23 KGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVLKKLTSGVPGKFK 177          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_METM5 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=prf1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.006e-17
Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDD-GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWK 670
            +G GT +IS+ +P   ++S +++ L  E   +SNIKS+   ++V  AI    QRLKL  +    G++++ G I     G EK      EP  P+   +Y CD+ F+TD L + ++  + +G I++D N    GT+ G T  VL       P  +K
Sbjct:   23 KGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVLKKLTSGVPGKFK 177          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: RF1_HALMA (Peptide chain release factor subunit 1 OS=Haloarcula marismortui GN=prf1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.422e-17
Identity = 56/157 (35.67%), Postives = 83/157 (52.87%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPRTWKK 673
            +G+GT ++S+ +P    +S V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NGLV+++G   T  G+   VT   E P  PI +  Y CD++F T+ L  +L     FG IV+D      G L G   E + S+    P   +K
Sbjct:   28 QGSGTQLVSIYIPEGKLISDVVAHVTQEHSEASNIKSKDTRTAVQDALTSIKDRLRYYDVRPPDNGLVVFSGAFDTGGGRTDMVTKVLESPPDPIESFRYHCDSEFLTEPLEHMLADKGLFGLIVLDRREANVGWLKGKRVEPVKSASSLVPGKQRK 184          
The following BLAST results are available for this feature:
BLAST of FC930261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RF1_HALLT8.146e-1932.42Peptide chain release factor subunit 1 OS=Halorubr... [more]
RF12_METAC1.815e-1836.49Peptide chain release factor subunit 1-2 OS=Methan... [more]
RF1_HALSA2.370e-1834.62Peptide chain release factor subunit 1 OS=Halobact... [more]
RF1_HALS32.370e-1834.62Peptide chain release factor subunit 1 OS=Halobact... [more]
RF1_METVS4.043e-1832.26Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METMP2.006e-1731.61Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METM72.006e-1732.26Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METM62.006e-1732.26Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METM52.006e-1732.26Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_HALMA3.422e-1735.67Peptide chain release factor subunit 1 OS=Haloarcu... [more]

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Properties
Property NameValue
Genbank descriptionC34005E05EF PostHarvC1 Citrus clementina cDNA clone C34005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930261 ID=FC930261; Name=FC930261; organism=Citrus clementina; type=EST; length=689bp
GACTTTTATTCTTATTACATCCTCCCTTCTCCTACGAGTTAAGCAAATTC
CATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCGGTGCTTTTATCA
CTGTTTTAGAGTTACTGTATCCACTTTACAATGGCAGATGGTCAGGAGAC
TGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGATCAAAGCACTTG
AAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTAATCATGCCTCCT
CGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGATGAGTTTGGAAC
TGCTTCAAACATCAAAAGCAGGGTCAATCGTCAATCTGTATTGGGTGCAA
TCACATCTGCTCAGCAAAGATTGAAGCTTTACAACAAGGTCCCTCCCAAT
GGGCTTGTGCTGTACACGGGAACAATTGTTACTGATGATGGGAAGGAAAA
GAAGGTTACAATTGACTTCGAGCCTTTCAGGCCTATTAATGCATCTCTTT
ACCTCTGTGACAATAAGTTTCACACTGACGCTCTGAATGAACTGTTGGAG
TCTGATGACAAGTTTGGTTTTATTGTCATGGATGGTAATGGAACCCTTTT
TGGGACTCTAAGTGGTAACACCCGTGAGGTGCTTCACAGTTCAGTGTTGA
CCTTCCCAAGAACATGGAAGAAGTGGACAGTCAGCCCTT
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