FC930275

Overview
NameFC930275
Unique NameFC930275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 4.926e-55
Identity = 103/136 (75.74%), Postives = 111/136 (81.62%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            MGK+KI INGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHGQWKH ++ +KD KTLLFGEKPVTVFG+RNPEEIPW E GAEYVVESTGVFT               V+ISAPSKDAPMF  G
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIALKDSKTLLFGEKPVTVFGIRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVG 136          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.872e-54
Identity = 104/136 (76.47%), Postives = 111/136 (81.62%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            M  +KI INGFGRIGRLVARVILQR+D ELVAVNDPFITT+YMTYMFKYDSVHGQWKHH++KVKD+KTLLFGEK VTVFG RNPEEIPW  TGA+YVVESTGVFT               VIISAPSKDAPMF  G
Sbjct:    1 MAPIKIGINGFGRIGRLVARVILQREDCELVAVNDPFITTEYMTYMFKYDSVHGQWKHHDIKVKDEKTLLFGEKAVTVFGNRNPEEIPWGGTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVG 136          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.872e-54
Identity = 106/136 (77.94%), Postives = 110/136 (80.88%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            M  +KI INGFGRIGRLVARV LQRDDVELVAVNDPFI+TDYMTYMFKYDSVHG WKHHELKVKD+KTLLFGEKPV VFG RNPEEIP A TGAEY+VESTGVFT               VIISAPSKDAPMF  G
Sbjct:    1 MAPIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGAWKHHELKVKDEKTLLFGEKPVVVFGRRNPEEIPRASTGAEYIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVG 136          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.170e-54
Identity = 103/136 (75.74%), Postives = 108/136 (79.41%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            M K+KI INGFGRIGRLVARV LQ DDVELVAVNDPFI+TDYMTYMFKYD+VHGQWKHHE+KVKD KTLLFGEK V VFG RNPEEIPW   GAEYVVESTGVFT               V+ISAPSKDAPMF  G
Sbjct:    1 MAKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFISTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWGSVGAEYVVESTGVFTDQEKAAAHLKGGAKKVVISAPSKDAPMFVVG 136          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 4.170e-54
Identity = 101/136 (74.26%), Postives = 110/136 (80.88%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            MGK+KI INGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHG WKH ++ +KD KTLLFG+KPVTVFG+RNPEEIPW E GAEYVVESTGVFT               V+ISAPSKDAPMF  G
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGHWKHSDITLKDSKTLLFGDKPVTVFGIRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVG 136          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.213e-53
Identity = 102/135 (75.56%), Postives = 108/135 (80.00%), Query Frame = 3
Query:   78 GKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            GK+KI INGFGRIGRLVARV L RDD+ELVAVNDPFI+TDYMTYMFKYDSVHGQWK HE+KVKD  TLLFGEK VTVFG RNPEEIPW ETG EYVVESTGVFT               V+I+APSKDAPMF  G
Sbjct:    5 GKIKIGINGFGRIGRLVARVALLRDDIELVAVNDPFISTDYMTYMFKYDSVHGQWKKHEVKVKDSNTLLFGEKAVTVFGCRNPEEIPWGETGVEYVVESTGVFTDKEKAAAHIKGGAKKVVITAPSKDAPMFVVG 139          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 4.610e-53
Identity = 100/135 (74.07%), Postives = 107/135 (79.26%), Query Frame = 3
Query:   78 GKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            GK+KI INGFGRIGRLVARV L RDD+ELV VNDPFI+TDYM+YMFKYDSVHG+WKHHE+ VKD KTLLFGEK V VFG RNPEEIPW E GAEYVVESTGVFT               V+ISAPSKDAPMF  G
Sbjct:    5 GKIKIGINGFGRIGRLVARVALTRDDIELVGVNDPFISTDYMSYMFKYDSVHGKWKHHEVNVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSKDAPMFVVG 139          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 2.988e-52
Identity = 100/136 (73.53%), Postives = 109/136 (80.15%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            M KVK+ INGFGRIGRLVARVILQRDD ELVAVNDPFI+TDYMTYMFKYDSVHGQ K HE+K+KD+KTLLFGE PV VFG RNPEEIPW + GA++VVESTGVFT               V+ISAPSKDAPMF  G
Sbjct:    1 MAKVKVGINGFGRIGRLVARVILQRDDCELVAVNDPFISTDYMTYMFKYDSVHGQCKSHEIKLKDEKTLLFGETPVAVFGCRNPEEIPWGQAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVG 136          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 8.695e-52
Identity = 101/134 (75.37%), Postives = 107/134 (79.85%), Query Frame = 3
Query:   81 KVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            K+KI INGFGRIGRLVARV L+RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWK+ EL VKD  TLLFG+KPVTVF  RNPEEIPWA TGA+ +VESTGVFT               VIISAPSKDAPMF  G
Sbjct:    4 KIKIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELTVKDSNTLLFGQKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVG 137          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.483e-51
Identity = 99/135 (73.33%), Postives = 108/135 (80.00%), Query Frame = 3
Query:   78 GKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            GK+KI INGFGRIGRLVARV LQRDD+ELVAVNDPFI+T+ +T +FKYDSVHGQWK HE+KVKD+KTLLFGEK V VFG RNPEEIPW E GAEYVVESTGVFT               V+ISAPSKDAPMF  G
Sbjct:    5 GKIKIGINGFGRIGRLVARVALQRDDIELVAVNDPFISTESLTSLFKYDSVHGQWKKHEVKVKDEKTLLFGEKHVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVG 139          
The following BLAST results are available for this feature:
BLAST of FC930275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
G3PD_MAIZE4.926e-5575.74Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA1.872e-5476.47Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ANTMA1.872e-5477.94Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE4.170e-5475.74Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE4.170e-5474.26Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI1.213e-5375.56Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY4.610e-5374.07Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR2.988e-5273.53Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA8.695e-5275.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA1.483e-5173.33Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC34005F11EF PostHarvC1 Citrus clementina cDNA clone C34005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930275 ID=FC930275; Name=FC930275; organism=Citrus clementina; type=EST; length=513bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCAGAATTAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTTGTTGTGGGTGTCAATGAGCACGAGTA
CAAACCAGAGCTC
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