FC930275

Overview
NameFC930275
Unique NameFC930275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.955e-19
Identity = 52/135 (38.52%), Postives = 75/135 (55.56%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVI----LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK-------DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS 455
            +K+ INGFGRIGR+V + +    L  +++++VAV D      Y  Y  KYDSVHG++KH     K       DD  ++ G + + V   RNP ++PW + G EYV+ESTG+FT               V+ISAP+
Sbjct:    3 IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPA 137          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PG_TRYCR (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.909e-19
Identity = 49/135 (36.30%), Postives = 75/135 (55.56%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVI----LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK-------DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS 455
            +K+ INGFGRIGR+V + +    L   ++++VAV D     +Y  Y  +YD+VHG++K+     K       DD  ++ G + + V   RNP ++PW + G EYV+ESTG+FT               V+ISAP+
Sbjct:    3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPA 137          

HSP 2 Score: 23.483 bits (49), Expect = 3.909e-19
Identity = 10/22 (45.45%), Postives = 12/22 (54.55%), Query Frame = 1
Query:  442 SQPPARMLLCFVVGVNEHEYKP 507
            S P +      V+GVN HEY P
Sbjct:  134 SAPASGGAKTLVMGVNHHEYNP 155          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_CHLTR (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia trachomatis GN=gap PE=3 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 5.688e-19
Identity = 54/135 (40.00%), Postives = 78/135 (57.78%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFCCG 482
            ++I INGFGRIGRLV R IL+R+  +E+VA+ND  +  D +TY+FKYDS HG +         D  L+ GE+ V     ++ +++PW +   + VVESTG+F                V+I+AP+K D P F  G
Sbjct:    1 MRIVINGFGRIGRLVLRQILKRNSPIEVVAIND-LVAGDLLTYLFKYDSTHGSFAPQ--ATFSDGCLVMGERKVHFLAEKDVQKLPWKDLDVDVVVESTGLFVNRDDVAKHLDSGAKRVLITAPAKGDVPTFVMG 132          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_CHLMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia muridarum GN=gap PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.688e-19
Identity = 53/135 (39.26%), Postives = 79/135 (58.52%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFCCG 482
            ++I INGFGRIGRLV R IL+R+  +E+VA+ND  ++ D +TY+FKYDS HG +         D  L+ GE+ +     ++ +++PW +   + VVESTG+F                V+I+AP+K D P F  G
Sbjct:    1 MRIVINGFGRIGRLVLRQILKRNAPIEVVAIND-LVSGDLLTYLFKYDSTHGSFASQ--ATFSDGCLVVGERKIRFLAEKDVQKLPWKDLDVDVVVESTGLFVNKDDAAKHLDSGAKRVLITAPAKGDVPTFVMG 132          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_BACCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus coagulans GN=gap PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 5.688e-19
Identity = 55/125 (44.00%), Postives = 71/125 (56.80%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK 458
            VK+ INGFGRIGR V R  ++  D+E+VAVND     D + ++ KYDSVHG+    E+ V D  ++    K + V   RNPE + W E G + VVESTG FT               VIISAP+K
Sbjct:    3 VKVGINGFGRIGRNVFRAAVKNPDIEVVAVNDLTANADGLAHLLKYDSVHGR-LDAEVVVNDGVSV--NGKEIIVKAERNPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAK 124          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.688e-19
Identity = 49/126 (38.89%), Postives = 76/126 (60.32%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            +K+ INGFGRIGR   R    R+++E+VA+ND      ++ ++ KYDSVHG +K   ++ KDD  ++ G K + VF  ++P +IPW + G + V+E+TGVF                VII+AP+K+
Sbjct:    3 IKVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFKG-SVEAKDDSIVVDG-KEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAKN 125          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 7.429e-19
Identity = 54/136 (39.71%), Postives = 81/136 (59.56%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDA-PMFCCG 482
            +K+ INGFGRIGR+V R  ++   +D+++V +ND  +  +Y+ YM KYDSVHG+++  E+ V+D   ++ G K + +    +P  + W E  A+ VVESTG F                VI+SAPSKD+ PMF  G
Sbjct:    2 IKVGINGFGRIGRMVFRAAVKNFGNDIQIVGIND-LLDAEYLAYMLKYDSVHGRFE-GEVAVEDGALIVNGNK-IRLTAEMDPANLKWNEVDADVVVESTGFFLTDETARKHIQAGAKKVIMSAPSKDSTPMFVYG 134          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 7.429e-19
Identity = 53/134 (39.55%), Postives = 71/134 (52.99%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFCCG 482
            VK+ INGFGRIGR+V R    R D+E+V +ND  +  +YM Y  KYDS HG++      +K    L+   K + V   R+P  + W E G E VVESTG+F                V+++ P K D PMF  G
Sbjct:    2 VKVGINGFGRIGRVVFRAAQMRPDIEIVGIND-LLDAEYMAYSLKYDSTHGRFDGTVEVIKG--ALVVNGKSIRVTSERDPANLKWDEIGVEVVVESTGLFLTQETAHKHIEAGARRVVMTGPPKDDTPMFVMG 132          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.267e-18
Identity = 54/126 (42.86%), Postives = 70/126 (55.56%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            VKI INGFGRIGR V R  L+ D+VE+VA+ND     + + ++ KYDSVHG  K     V D   L+   K + +   R+P ++ W + G E VVESTG FT               VIISAP+ D
Sbjct:    3 VKIGINGFGRIGRNVFRAALKNDNVEVVAIND-LTDANMLAHLLKYDSVHG--KLDAEVVVDGSNLVVNGKTIEISAERDPAQLSWGKQGVEIVVESTGFFTKRADAAKHLEAGAKKVIISAPASD 125          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_BUCBP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=gapA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.655e-18
Identity = 49/134 (36.57%), Postives = 79/134 (58.96%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFCCG 482
            +KI INGFGRIGR++ R+   R ++E++A+ND  I   Y+ YM KYDS+HG + + ++ +K++ TL    K + +   ++P+ + W +   + V+ESTG+F                VII++P KD  PMF  G
Sbjct:    3 IKIGINGFGRIGRVLFRLAQLRSNIEILAIND-LINVQYIAYMLKYDSIHGNF-NGKIVIKNE-TLFVNGKKIRITNEKDPKNLMWGDLNIDVVIESTGIFLTTEDSYKHIQAGAKKVIITSPPKDNTPMFVRG 133          
The following BLAST results are available for this feature:
BLAST of FC930275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
G3PG_TRYBB1.955e-1938.52Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PG_TRYCR3.909e-1936.30Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_CHLTR5.688e-1940.00Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P_CHLMU5.688e-1939.26Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P_BACCO5.688e-1944.00Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_AQUAE5.688e-1938.89Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]
G3P_BACFR7.429e-1939.71Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]
G3PC_LEIME7.429e-1939.55Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_BACME1.267e-1842.86Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_BUCBP1.655e-1836.57Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005F11EF PostHarvC1 Citrus clementina cDNA clone C34005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930275 ID=FC930275; Name=FC930275; organism=Citrus clementina; type=EST; length=513bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCAGAATTAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTTGTTGTGGGTGTCAATGAGCACGAGTA
CAAACCAGAGCTC
back to top