FC930275

Overview
NameFC930275
Unique NameFC930275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_MYCGE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma genitalium GN=gapA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.687e-18
Identity = 51/126 (40.48%), Postives = 74/126 (58.73%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            +K+ INGFGRIGRLV R +L + +VE+VA+ND     + + ++ KYDS HG+ K  ++ VK +  L    K V VF  ++P+ +PW E   + V+ESTG F                VIISAP+K+
Sbjct:    8 IKVAINGFGRIGRLVFRSLLSKANVEVVAIND-LTQPEVLAHLLKYDSAHGELK-RKITVKQN-ILQIDRKKVYVFSEKDPQNLPWDEHDIDVVIESTGRFVSEEGASLHLKAGAKRVIISAPAKE 130          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PG_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Leishmania mexicana GN=GAPG PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 5.403e-18
Identity = 49/138 (35.51%), Postives = 74/138 (53.62%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRD----DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD-------DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS 455
            M  +K+ INGFGRIGR+V + I  +     ++++VAV D     +Y  Y  K+D+VHG+ K+    VK        D  ++ G +   V   RNP ++PW + G +YV+ESTG+FT               V+ISAP+
Sbjct:    1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPA 138          

HSP 2 Score: 24.2534 bits (51), Expect = 5.403e-18
Identity = 10/22 (45.45%), Postives = 13/22 (59.09%), Query Frame = 1
Query:  442 SQPPARMLLCFVVGVNEHEYKP 507
            S P +      V+GVN+HEY P
Sbjct:  135 SAPASGGAKTIVMGVNQHEYSP 156          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_XANFL (Glyceraldehyde-3-phosphate dehydrogenase OS=Xanthobacter flavus GN=gap PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.289e-18
Identity = 53/131 (40.46%), Postives = 77/131 (58.78%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM 470
            VK+ INGFGRIGR V R I++  R D+E+VA+ND     +   ++F++DSVHG++   E+KV  D T+  G  P+ V  VRNP E+P  E G +  +E TG+FT               V++SAP+  A +
Sbjct:    3 VKVAINGFGRIGRNVLRAIIESGRTDIEVVAIND-LGPVETNAHLFRFDSVHGRFPG-EVKVAGD-TIDVGRGPIKVTAVRNPAELPHKELGVDIALECTGIFTSRDKAAAHLAAGAKRVLVSAPADGADL 130          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 90.1225 bits (222), Expect = 6.289e-18
Identity = 54/126 (42.86%), Postives = 73/126 (57.94%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            VK+ INGFGRIGR V R  L+  D+E+VAVND     + + ++ KYDSVHG+    E+ V  +  ++ G K + V   R+PE + W E G + VVESTG FT               VIISAP+K+
Sbjct:    3 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGR-LDAEVSVNGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKN 125          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.390e-17
Identity = 51/127 (40.16%), Postives = 75/127 (59.06%), Query Frame = 3
Query:   87 KIRINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK-DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK 458
            ++ INGFGRIGRLV R+I +R   D+E+VA+ND    T  + ++ KYDSVH   K    KV+  + +L+   K + VF   +P ++PW + G ++V+ESTGVF                VII+AP+K
Sbjct:    3 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVH---KKFPGKVEYTENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAK 125          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.390e-17
Identity = 50/127 (39.37%), Postives = 72/127 (56.69%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            +++ INGFGRIGR   R +L++  D+E+VAVND    T    ++ KYD++ G+ K      +D  T+    K + V   RNP +IPW E G + V+ESTG+FT               V+ISAP+KD
Sbjct:    3 IRVGINGFGRIGRNYFRALLEQGADIEIVAVND-LGDTATTAHLLKYDTILGRLKAEVSHTED--TITVDGKTIKVLSERNPADIPWGELGVDIVIESTGIFTKKADAEKHIAGGAKKVLISAPAKD 126          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.121e-17
Identity = 54/127 (42.52%), Postives = 73/127 (57.48%), Query Frame = 3
Query:   87 KIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMT--YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            KI INGFGRIGR V R  L   +VE+VA+ND    TD  T  ++ KYD+VHG   + E+   ++  ++ G K + V   R+P ++PW++ G E VVESTG FT               VIISAP+ D
Sbjct:    3 KIGINGFGRIGRNVFRAALNNSEVEVVAIND---LTDAKTLAHLLKYDTVHGTL-NAEVSANENSIVVNG-KEIKVIAERDPAQLPWSDYGVEVVVESTGRFTKKSDAEKHLGGSVKKVIISAPASD 124          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PG_CRIFA (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Crithidia fasciculata GN=GAPDG PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 4.411e-17
Identity = 47/138 (34.06%), Postives = 75/138 (54.35%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRD----DVELVAVNDPFITTDYMTYMFKYDSVHGQWKH-------HELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS 455
            M  +K+ INGFGRIGR+V + + + +    ++++VAV D     +Y  Y  K+D+VHG+ K+            K D  ++ G + + V   RNP ++PW + G +YV+ESTG+FT               V+ISAP+
Sbjct:    1 MAPIKVGINGFGRIGRMVFQSMCEDNVLGTELDVVAVVDMSTDAEYFAYQMKFDTVHGRPKYTVEVAKSSPSAKKPDVLVVNGHRILCVKADRNPADLPWGKLGVDYVIESTGLFTDKAKAEGHVKGGAKKVVISAPA 138          

HSP 2 Score: 24.2534 bits (51), Expect = 4.411e-17
Identity = 10/22 (45.45%), Postives = 13/22 (59.09%), Query Frame = 1
Query:  442 SQPPARMLLCFVVGVNEHEYKP 507
            S P +      V+GVN+HEY P
Sbjct:  135 SAPASGGAKTIVMGVNQHEYNP 156          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_CLOPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium pasteurianum GN=gap PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.324e-17
Identity = 50/123 (40.65%), Postives = 73/123 (59.35%), Query Frame = 3
Query:   87 KIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS 455
            K+ INGFGRIGRL  R IL+   +E+VA+ND       + ++FKYDS  G++ + E++VK+   ++ G K V VF   +PE++PW E G + V+E TG FT               V+ISAP+
Sbjct:    3 KVAINGFGRIGRLALRRILEVPGLEVVAIND-LTDAKMLAHLFKYDSSQGRF-NGEIEVKEGAFVVNG-KEVKVFAEADPEKLPWGELGIDVVLECTGFFTKKEKAEAHVRAGAKKVVISAPA 122          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_CLOAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium acetobutylicum GN=gap PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.081e-17
Identity = 50/123 (40.65%), Postives = 73/123 (59.35%), Query Frame = 3
Query:   87 KIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS 455
            KI INGFGRIGRL  R IL+   +E+VA+ND       + ++FKYDS  G++ + E++VK+   ++ G K V VF   +PE++PW + G + V+E TG FT               V+ISAP+
Sbjct:    3 KIAINGFGRIGRLALRRILEVPGLEVVAIND-LTDAKMLAHLFKYDSSQGRF-NGEIEVKEGAFVVNG-KEVKVFAEADPEKLPWGDLGIDVVLECTGFFTKKEKAEAHVRAGAKKVVISAPA 122          
The following BLAST results are available for this feature:
BLAST of FC930275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
G3P_MYCGE3.687e-1840.48Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
G3PG_LEIME5.403e-1835.51Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_XANFL6.289e-1840.46Glyceraldehyde-3-phosphate dehydrogenase OS=Xantho... [more]
G3P_BACST6.289e-1842.86Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_THEMA2.390e-1740.16Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]
G3P_STRCO2.390e-1739.37Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P1_BACCE3.121e-1742.52Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3PG_CRIFA4.411e-1734.06Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_CLOPA5.324e-1740.65Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
G3P_CLOAB9.081e-1740.65Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]

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Properties
Property NameValue
Genbank descriptionC34005F11EF PostHarvC1 Citrus clementina cDNA clone C34005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930275 ID=FC930275; Name=FC930275; organism=Citrus clementina; type=EST; length=513bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCAGAATTAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTTGTTGTGGGTGTCAATGAGCACGAGTA
CAAACCAGAGCTC
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