FC930275

Overview
NameFC930275
Unique NameFC930275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.186e-16
Identity = 52/126 (41.27%), Postives = 70/126 (55.56%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            VK+ INGFGRIGR V R  L   +VE+VAVND     + + ++ +YDSVHG+    E+ V D   L+   K + V   R+P ++ W + G E VVESTG FT               VIISAP+ +
Sbjct:    3 VKVGINGFGRIGRNVFRAALNNPEVEVVAVND-LTDANMLAHLLQYDSVHGKLDA-EVSV-DGNNLVVNGKTIEVSAERDPAKLSWGKQGVEIVVESTGFFTKRADAAKHLEAGAKKVIISAPANE 125          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.640e-16
Identity = 51/130 (39.23%), Postives = 75/130 (57.69%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMT--YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            +++ INGFGRIGR  AR  L R++  +ELVAVND   T+D  T  ++ KYDS+ G+ K+ ++   DD ++    K +     RNPE +PW E   + ++ESTGVFT               V+I+AP K+
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENSNIELVAVND---TSDPRTNAHLLKYDSMLGKLKNVDITA-DDNSITVNGKTIKCVSDRNPENLPWKEWEIDLIIESTGVFTSKEGALKHVNAGAKKVLITAPGKN 127          

HSP 2 Score: 22.3274 bits (46), Expect = 1.640e-16
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  472 FVVGVNEHEY 501
            FV+GVN H+Y
Sbjct:  132 FVIGVNHHDY 141          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.642e-16
Identity = 53/140 (37.86%), Postives = 77/140 (55.00%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFCCG 482
            + K+K+ INGFGRIGR   R    R D  +++V VND        T++ KYDS+ G +K  ++K+ D++T     KP+ V   R+P ++PWAE G + V+E TGVF                VII+AP+K  D P +  G
Sbjct:   82 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKS-ATHLLKYDSILGTFKA-DVKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGSDIPTYVVG 219          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.451e-16
Identity = 52/140 (37.14%), Postives = 79/140 (56.43%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFCCG 482
            + K+K+ INGFGRIGR   R    R D  +E++ VND     +  +++ KYDS+ G +K  E+K+ +++T+    KP+ V   R+P ++PWAE G + V+E TGVF                VII+AP+K  D P +  G
Sbjct:   83 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKN-ASHLLKYDSMLGTFKA-EVKILNNETITVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVIG 220          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.451e-16
Identity = 43/127 (33.86%), Postives = 74/127 (58.27%), Query Frame = 3
Query:   81 KVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            KVK+ INGFGRIGR+V R  +  D +++VA+N  + + + + ++ KYD++HG++    +  +D  +L+   K V +   R+P+++PW E   + VVE+TG F                VI++AP K+
Sbjct:    2 KVKVAINGFGRIGRMVFRKAMLDDQIQVVAINASY-SAETLAHLIKYDTIHGRYDKEVVAGED--SLIVNGKKVLLLNSRDPKQLPWREYDIDIVVEATGKFNAKDKAMGHIEAGAKKVILTAPGKN 125          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.736e-15
Identity = 49/130 (37.69%), Postives = 74/130 (56.92%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMT--YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            +++ INGFGRIGR  AR  L R++  +ELVAVND   T+D  T  ++ KYDS+ G+ K+ ++   DD ++    K +     RNPE +PW E   + ++E+TGVF                V+I+AP K+
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENTNIELVAVND---TSDPRTNAHLLKYDSMLGKLKNVDITA-DDNSITVNGKTIKCVSDRNPENLPWKEWEIDLIIEATGVFVSKEGATKHINAGAKKVLITAPGKN 127          

HSP 2 Score: 21.9422 bits (45), Expect = 1.736e-15
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  472 FVVGVNEHEYKPEL 513
            FV+GVN H+Y   L
Sbjct:  132 FVMGVNHHDYDHNL 145          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.912e-15
Identity = 51/140 (36.43%), Postives = 78/140 (55.71%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFCCG 482
            + K+K+ INGFGRIGR   R    R D  +++V VND     +  +++ KYDS+ G +K  ++K+ D++T+    K + V   R+P ++PWAE G + V+E TGVF                VII+AP+K  D P +  G
Sbjct:   52 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSMLGTFKA-DVKIVDNETISVDGKHIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVG 189          

HSP 2 Score: 21.9422 bits (45), Expect = 2.912e-15
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  472 FVVGVNEHEYKPEL 513
            +VVGVNE +Y  E+
Sbjct:  186 YVVGVNEQDYSHEV 199          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_THEAQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermus aquaticus GN=gap PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.921e-15
Identity = 51/127 (40.16%), Postives = 71/127 (55.91%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMT--YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK 458
            +K+ INGFGRIGR V R++  R  VE+  +ND    TD  T  ++ KYDS++ ++        DD+ L    K +    V++P+EIPWAE G   V+ESTGVFT               VII+AP+K
Sbjct:    1 MKVGINGFGRIGRQVFRILHSRG-VEVALIND---LTDNKTLAHLLKYDSIYHRFPGEV--AYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAK 121          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 3.815e-15
Identity = 52/140 (37.14%), Postives = 78/140 (55.71%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFCCG 482
            + K+K+ INGFGRIGR   R    R D  +E+V +ND     +  +++ KYDS+ G +K  E+K+ D++T+    K + V   R+P ++PWAE G + V+E TGVF                VII+AP+K  D P +  G
Sbjct:   79 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVLNDSGGVKN-ASHLLKYDSMLGTFKA-EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGASKVIITAPAKGADIPTYVMG 216          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_MYCLE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium leprae GN=gapA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.983e-15
Identity = 46/132 (34.85%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRD-----DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN-PEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            V++ INGFGRIGR   R +L +      DV++VA+ND       + Y+ K+DS+ G+  H ++ ++++ T++ G + +    VR  P  +PW   G + VVESTG+FT               VI+SAP+ D
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEHGIADVQVVAIND-ITDNSTLAYLLKFDSILGRLPH-DVSLEEEDTIVVGSEKIKALAVREGPAALPWHAFGVDVVVESTGLFTNAAKAKGHLEAGAKKVIVSAPATD 132          
The following BLAST results are available for this feature:
BLAST of FC930275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
G3P1_BACSU1.186e-1641.27Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P2_ANAVT1.640e-1639.23Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3PB_SPIOL2.642e-1637.86Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_PEA3.451e-1637.14Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P2_BACSU3.451e-1633.86Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]
G3P2_ANASP1.736e-1537.69Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3PB_TOBAC2.912e-1536.43Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P_THEAQ2.921e-1540.16Glyceraldehyde-3-phosphate dehydrogenase OS=Thermu... [more]
G3PB_ARATH3.815e-1537.14Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P_MYCLE4.983e-1534.85Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]

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Properties
Property NameValue
Genbank descriptionC34005F11EF PostHarvC1 Citrus clementina cDNA clone C34005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930275 ID=FC930275; Name=FC930275; organism=Citrus clementina; type=EST; length=513bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCAGAATTAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTTGTTGTGGGTGTCAATGAGCACGAGTA
CAAACCAGAGCTC
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