FC930275

Overview
NameFC930275
Unique NameFC930275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.937e-51
Identity = 98/125 (78.40%), Postives = 104/125 (83.20%), Query Frame = 3
Query:  108 GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            GRIGRLVARV LQRDDVELVAVNDPFI+TDYMTYMFKYDSVHGQWKHHELKVKD+KTLLFGEK V VFG+RNPEEIPWAE GA++VVESTGVFT               V+ISAPSKDAPMF  G
Sbjct:    1 GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGEKSVRVFGIRNPEEIPWAEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVG 125          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 5.636e-51
Identity = 99/134 (73.88%), Postives = 106/134 (79.10%), Query Frame = 3
Query:   81 KVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            K+KI INGFGRIGRLVARV L  DD+ELVAVNDPFITT+YMTYMFKYDSVHGQWK  ELKVKD KTLLFG+KP+TVFGVRNPEE PW E GAEYVVESTGVFT               V+ISAPS +APMF  G
Sbjct:    2 KMKIGINGFGRIGRLVARVALMSDDIELVAVNDPFITTEYMTYMFKYDSVHGQWKKDELKVKDSKTLLFGDKPLTVFGVRNPEEDPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSGNAPMFVVG 135          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.644e-42
Identity = 82/134 (61.19%), Postives = 97/134 (72.39%), Query Frame = 3
Query:   81 KVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            K+K+ INGFGRIGRLVARV L+RDD+ELVA+NDPFIT +YMTYMFKYDS HGQWK  E+ +  +  L FG  PV V+  R+P EIPW + GA++VVESTGVFT               V+ISAPSKDAPMF  G
Sbjct:    6 KIKVGINGFGRIGRLVARVALERDDIELVAINDPFITPEYMTYMFKYDSTHGQWKKTEVTLHSEGHLTFGGNPVAVYACRDPSEIPWGKHGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVMG 139          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.100e-41
Identity = 80/104 (76.92%), Postives = 82/104 (78.85%), Query Frame = 3
Query:  171 VNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VNDPFITTDYMTYMFKYD+VHGQWKHHE+KVKD KTLLFGEK V VFG RNPEEIPWA  GAEYVVESTGVFT               VIISAPSKDAPMF CG
Sbjct:    1 VNDPFITTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWAAAGAEYVVESTGVFTDKDKAAAHIKGGAKKVIISAPSKDAPMFVCG 104          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.141e-35
Identity = 77/133 (57.89%), Postives = 92/133 (69.17%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK+ INGFGRIGRLV R  L+   VE+VAVNDPFI  DYM YMFK+DSVHG++K   ++ KD K ++ G KP+ VFG R+P  IPW  +GA+YVVESTGVFT               VIISAPS DAPM+ CG
Sbjct:    3 VKVGINGFGRIGRLVIRNALEAQGVEVVAVNDPFIPLDYMVYMFKFDSVHGRYK-GTVEAKDGKLIIAG-KPIAVFGERDPASIPWGASGADYVVESTGVFTTIDKASAHLKGGAKKVIISAPSADAPMYVCG 133          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.490e-35
Identity = 74/132 (56.06%), Postives = 93/132 (70.45%), Query Frame = 3
Query:   87 KIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            K+ INGFGRIGR+V R  L+  D+++VA+NDPFI  DYM YMFKYDS HG++K  +++ KD K ++ G KP++VFG R+P  IPW + GA+YVVESTGVFT               VIISAPS DAPMF CG
Sbjct:    4 KVGINGFGRIGRIVLRNALEHGDIDVVAINDPFIDLDYMVYMFKYDSTHGRFK-GKVETKDGKLVIEG-KPISVFGERDPAAIPWGKAGADYVVESTGVFTTIEKASLHLKGGAKKVIISAPSADAPMFVCG 133          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.395e-35
Identity = 72/132 (54.55%), Postives = 93/132 (70.45%), Query Frame = 3
Query:   87 KIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            ++ INGFGRIGRLV R  +++D + +VA+NDPFI  +YM YMFK+DS HG++    ++ KD K ++ G K +T++G R+P EIPWAE GA+YVVESTGVFT               VIISAPSKDAPMF CG
Sbjct:    5 QVGINGFGRIGRLVLRAAIEKDTMSVVAINDPFIDLEYMAYMFKFDSTHGRYAG-SVETKDGKLIVNG-KSITIYGHRDPAEIPWAEAGADYVVESTGVFTLKEKAEKHFTGGAKKVIISAPSKDAPMFVCG 134          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.261e-34
Identity = 75/133 (56.39%), Postives = 89/133 (66.92%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK+ INGFGRIGR+V R  ++  D+E+VAVNDPFI  DYM YMFKYDS HG++K   ++VKD K L    K + VFG ++P  I W E GAEYVVESTGVFT               V+ISAPS DAPMF CG
Sbjct:    3 VKVGINGFGRIGRIVLRNAIEHGDLEVVAVNDPFIDLDYMVYMFKYDSTHGRFK-GSVEVKDGK-LYINNKAIAVFGEKDPANIKWGEAGAEYVVESTGVFTTTEKAGVHLKGGAKKVVISAPSADAPMFVCG 133          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_PHACH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phanerochaete chrysosporium GN=GPD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.395e-33
Identity = 74/133 (55.64%), Postives = 88/133 (66.17%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK  INGFGRIGR+V R  L   D+++VAVNDPFI  +YM YMFKYDSVHG++K   ++ KD K  + G KP+ VF  ++P  IPW   GAEY+VESTGVFT               VIISAPS DAPMF CG
Sbjct:    3 VKAGINGFGRIGRIVLRNALLHGDIDVVAVNDPFIDLEYMVYMFKYDSVHGRFK-GSVEAKDGKLYVEG-KPIHVFAEKDPANIPWGSVGAEYIVESTGVFTTTEKASAHLKGVCKKVIISAPSADAPMFVCG 133          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.379e-33
Identity = 73/133 (54.89%), Postives = 91/133 (68.42%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK+ INGFGRIGR+V R  LQ  D+E+VAVNDPFI  +YM YMFKYDSVHG++K   ++VK+   ++ G +P+ VF  R+P  IPW   GA+YVVESTGVFT               V+ISAPS DAPM+ CG
Sbjct:    2 VKVGINGFGRIGRIVLRNALQFQDIEVVAVNDPFIDLEYMAYMFKYDSVHGRFK-GTVEVKNGSFVVDG-RPMKVFAERDPAAIPWGSVGADYVVESTGVFTTIDKASAHLKGGAKKVVISAPSADAPMYVCG 132          
The following BLAST results are available for this feature:
BLAST of FC930275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
G3PC_TOBAC1.937e-5178.40Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR5.636e-5173.88Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA1.644e-4261.19Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_HORVU3.100e-4176.92Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_OMPOL1.141e-3557.89Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P_CRYCU1.490e-3556.06Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3PC_GRAVE7.395e-3554.55Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CRYNE1.261e-3456.39Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_PHACH1.395e-3355.64Glyceraldehyde-3-phosphate dehydrogenase OS=Phaner... [more]
G3P2_AGABI2.379e-3354.89Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]

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Properties
Property NameValue
Genbank descriptionC34005F11EF PostHarvC1 Citrus clementina cDNA clone C34005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930275 ID=FC930275; Name=FC930275; organism=Citrus clementina; type=EST; length=513bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCAGAATTAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTTGTTGTGGGTGTCAATGAGCACGAGTA
CAAACCAGAGCTC
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