FC930275

Overview
NameFC930275
Unique NameFC930275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.230e-14
Identity = 48/127 (37.80%), Postives = 68/127 (53.54%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK 458
            VK+ INGFGRIGRL AR IL R D  +ELV +ND   + +   ++FK DS HG +        +D  ++   K + V   R+P  +P  + G + V+E TG+FT               V+ISAP+K
Sbjct:    3 VKVAINGFGRIGRLAARAILSRPDSGLELVTIND-LGSVEGNAFLFKRDSAHGTYPGTVTTEGND--MVIDGKKIVVTAERDPANLPHKKLGVDIVMECTGIFTNTEKASAHLTAGAKKVLISAPAK 126          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_LACDE (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactobacillus delbrueckii subsp. bulgaricus GN=gap PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.230e-14
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVIL----QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET-GAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS 455
            VKI INGFGRIGRL  R I+    +  D+E+VA+ND   T   + ++ KYDS HG +  HE+   +D  ++ G+K   V+     + IPW +  G ++V+E TG +T               V+ISAP+
Sbjct:    3 VKIGINGFGRIGRLAFRRIMDLGEETKDIEVVAIND-LTTPAMLAHLLKYDSTHGTF-DHEVSATEDSLVVDGKK-YRVYAEPQAQNIPWVKNDGVDFVLECTGFYTSKAKSQAHLDAGAKRVLISAPA 128          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_SEROD (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia odorifera GN=gap PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.219e-14
Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  123 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFCCG 482
            +V R   +R D+E+VA+ND  +  +YM YM KYDS HG++ +  ++VKD   ++ G+  + V   ++P  + W E G + V E+TG+F                V+++ PSK D PMF  G
Sbjct:    1 IVFRAAQERSDIEIVAIND-LLDAEYMAYMLKYDSTHGRF-NGSVEVKDGHLVVNGQT-IRVTAEKDPANLKWNEVGVDVVAEATGIFLTDETARKHIAAGAKKVVLTGPSKDDTPMFVMG 118          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 5.510e-14
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRD-----DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN-PEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            V++ INGFGRIGR   R +L +      D+E+VAVND       + ++ K+DS+ G+  + ++ ++ + T++ G   +    VR  P  +PW + G + VVESTG+FT               VIISAP+ D
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADIEVVAVND-ITDNSTLAHLLKFDSILGRLPY-DVSLEGEDTIVVGPAKIKALEVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATD 132          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_ESCHE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia hermannii GN=gap PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.398e-14
Identity = 43/121 (35.54%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  123 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFCCG 482
            +V R    R D+E+VA+ND  +  +YM YM KYDS HG++    ++VKD   ++ G+K + V   ++P  + W E G + V E+TG+F                V+++ PSK D PMF  G
Sbjct:    1 IVFRAAQTRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRFDG-TVEVKDGHLVVNGKK-IRVTAEKDPANLKWNEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDDTPMFVKG 118          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_MYCTU (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium tuberculosis GN=gap PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.227e-13
Identity = 47/132 (35.61%), Postives = 70/132 (53.03%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRD-----DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN-PEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            V++ INGFGRIGR   R +L +      DVE+VA ND       + ++ K+DS+ G+    ++ ++ D T++ G   +    VR  P  +PW + G + VVESTG+FT               VIISAP+ D
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADVEVVAAND-ITDNSTLAHLLKFDSILGRLPC-DVGLEGDDTIVVGRAKIKALAVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATD 132          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_MYCBO (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium bovis GN=gap PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.227e-13
Identity = 47/132 (35.61%), Postives = 70/132 (53.03%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRD-----DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN-PEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            V++ INGFGRIGR   R +L +      DVE+VA ND       + ++ K+DS+ G+    ++ ++ D T++ G   +    VR  P  +PW + G + VVESTG+FT               VIISAP+ D
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADVEVVAAND-ITDNSTLAHLLKFDSILGRLPC-DVGLEGDDTIVVGRAKIKALAVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATD 132          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_LACLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactococcus lactis subsp. lactis GN=gap PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.094e-13
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF 386
            VK+ INGFGRIGRL  R I + + VE+  +ND       + ++ KYD+  G++K   ++VK+D   + G K V V   RNPE+I WA++G E V+E+TG F
Sbjct:    3 VKVGINGFGRIGRLALRRIQEVEGVEVAHIND-LTDPAMLAHLLKYDTTQGRFK-GTVEVKEDGFDVNG-KFVKVTAERNPEDIQWADSGVEIVLEATGFF 100          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_STRAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces arenae GN=gap PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.734e-13
Identity = 45/125 (36.00%), Postives = 67/125 (53.60%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS 455
            V+I INGFGRIGR V R    R  ++E+VAVND       M ++  YDS+ G++   E    +   +  G++ + V   R+P  +PW + G + V+ESTG+FT               VII+AP+
Sbjct:    3 VRIGINGFGRIGRNVFRAAAARSSELEIVAVND-LGDVPTMAHLLAYDSILGRFP--EEVTAEPGAIRVGDRTIKVLAERDPGALPWGDLGVDIVIESTGIFTDAAKARSHVDGGAKKVIIAAPA 124          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.252e-13
Identity = 45/138 (32.61%), Postives = 71/138 (51.45%), Query Frame = 3
Query:   81 KVKIRINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS--KDAPMFCCG 482
            K+++ INGFGRIGR   R    R +  +++VA+ND        +++ KYDS  G +   ++K+ DD  +    K + +   R+P ++PW E   + V+E TGVF                V+I+AP+  KD P F  G
Sbjct:   37 KIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSG-GVKQASHLLKYDSTLGTFAA-DVKIVDDSHISVDGKQIKIVSSRDPLQLPWKEMNIDLVIEGTGVFIDKVGAGKHIQAGASKVLITAPAKDKDIPTFVVG 172          

HSP 2 Score: 23.8682 bits (50), Expect = 3.252e-13
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  472 FVVGVNEHEYKPE 510
            FVVGVNE +YK E
Sbjct:  169 FVVGVNEGDYKHE 181          
The following BLAST results are available for this feature:
BLAST of FC930275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
G3P_ZYMMO3.230e-1437.80Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]
G3P_LACDE3.230e-1437.21Glyceraldehyde-3-phosphate dehydrogenase OS=Lactob... [more]
G3P_SEROD4.219e-1434.71Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_MYCAV5.510e-1434.85Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_ESCHE9.398e-1435.54Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_MYCTU1.227e-1335.61Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCBO1.227e-1335.61Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_LACLA2.094e-1343.56Glyceraldehyde-3-phosphate dehydrogenase OS=Lactoc... [more]
G3P_STRAE2.734e-1336.00Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3PA_CHLRE3.252e-1332.61Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionC34005F11EF PostHarvC1 Citrus clementina cDNA clone C34005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930275 ID=FC930275; Name=FC930275; organism=Citrus clementina; type=EST; length=513bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCAGAATTAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTTGTTGTGGGTGTCAATGAGCACGAGTA
CAAACCAGAGCTC
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