FC930275

Overview
NameFC930275
Unique NameFC930275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_ENTAE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Enterobacter aerogenes GN=gap PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.571e-13
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 3
Query:  123 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFCCG 482
            +V R   +R D+E+V +ND  +  +YM YM KYDS HG++    ++VKD   ++ G K + V   ++P  + W E G + V E+TG+F                V+++ PSKD  PMF  G
Sbjct:    1 IVFRAAQKRSDIEIVGIND-LLDAEYMAYMLKYDSTHGRFDG-TVEVKDGHLVVNG-KTIRVTAEKDPANLKWNEIGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVRG 118          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P3_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase C OS=Escherichia coli O157:H7 GN=gapC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.664e-13
Identity = 43/124 (34.68%), Postives = 69/124 (55.65%), Query Frame = 3
Query:   87 KIRINGFGRIGRLVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS 455
            K+ INGFGRIGRLV R +L+ + ++++VA+ND   +   + Y+ K+DS +G +       +D  +L+   K + V+  +  + IPW   GAE +VE TG +T               V+ISAP+
Sbjct:    3 KVGINGFGRIGRLVLRRLLEVKSNIDVVAIND-LTSPKILAYLLKHDSNYGPFPWSVDFTED--SLIVDGKSIAVYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPA 123          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_STRAU (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces aureofaciens GN=gap PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.039e-12
Identity = 46/127 (36.22%), Postives = 70/127 (55.12%), Query Frame = 3
Query:   87 KIRINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDA 464
            +I INGFGRIGR V R +L+RD D+++VAVND       +  +  YD+  G+     + V+ +  ++ G + +TV   R P  +PWAE G + V+E+TG FT               V++SAP+  A
Sbjct:    3 RIAINGFGRIGRNVLRALLERDSDLDVVAVND-LTEPATLARLLAYDTTSGRLGR-PVTVEGNVLVVDGRR-ITVTAEREPANLPWAELGVDIVLEATGRFTSAKAARAHLDAGAKKVLVSAPADGA 126          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.039e-12
Identity = 46/140 (32.86%), Postives = 69/140 (49.29%), Query Frame = 3
Query:   72 IMGKVKIRINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFCCG 482
            +  K+K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G +   ++K   D  +    K + V   RNP  +PW + G + V+E TGVF                V+I+AP K D P +  G
Sbjct:   63 VEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-DVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVG 200          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P3_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena sp. (strain PCC 7120) GN=gap3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.357e-12
Identity = 39/127 (30.71%), Postives = 68/127 (53.54%), Query Frame = 3
Query:   81 KVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            KV++ INGFGR+GRL  R      ++E V +N+         ++ K+DSVHG+W   E++ + ++ L+ G  P++      P+++PW + G + V+E +G F                VI++AP K+
Sbjct:    2 KVRVGINGFGRMGRLALRAAWDWPELEFVHINEIKGGAVAAAHLLKFDSVHGRWT-PEVEAEGERVLIDG-TPLSFSEYGKPDDVPWEDFGVDLVLECSGKFRTPATLDPYFKRGVQKVIVAAPVKE 126          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P2_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MW2) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.357e-12
Identity = 39/124 (31.45%), Postives = 66/124 (53.23%), Query Frame = 3
Query:   90 IRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD-DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK 458
            I ING GRIGR+V R+ LQ  ++ +VA+N  +   + + ++  YD+ HG+   + LKV+  +  L  G+  + +   RNPE +PW E   +  +++TG F                V+++ PSK
Sbjct:    5 IAINGMGRIGRMVLRIALQNKNLNVVAINASY-PPETIAHLINYDTTHGK---YNLKVEPIENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLTGPSK 124          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P2_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MSSA476) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.357e-12
Identity = 39/124 (31.45%), Postives = 66/124 (53.23%), Query Frame = 3
Query:   90 IRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD-DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK 458
            I ING GRIGR+V R+ LQ  ++ +VA+N  +   + + ++  YD+ HG+   + LKV+  +  L  G+  + +   RNPE +PW E   +  +++TG F                V+++ PSK
Sbjct:    5 IAINGMGRIGRMVLRIALQNKNLNVVAINASY-PPETIAHLINYDTTHGK---YNLKVEPIENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLTGPSK 124          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P2_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MRSA252) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.357e-12
Identity = 39/124 (31.45%), Postives = 66/124 (53.23%), Query Frame = 3
Query:   90 IRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD-DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK 458
            I ING GRIGR+V R+ LQ  ++ +VA+N  +   + + ++  YD+ HG+   + LKV+  +  L  G+  + +   RNPE +PW E   +  +++TG F                V+++ PSK
Sbjct:    5 IAINGMGRIGRMVLRIALQNKNLNVVAINASY-PPETIAHLINYDTTHGK---YNLKVEPIENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLTGPSK 124          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P2_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain N315) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.357e-12
Identity = 39/124 (31.45%), Postives = 66/124 (53.23%), Query Frame = 3
Query:   90 IRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD-DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK 458
            I ING GRIGR+V R+ LQ  ++ +VA+N  +   + + ++  YD+ HG+   + LKV+  +  L  G+  + +   RNPE +PW E   +  +++TG F                V+++ PSK
Sbjct:    5 IAINGMGRIGRMVLRIALQNKNLNVVAINASY-PPETIAHLINYDTTHGK---YNLKVEPIENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLTGPSK 124          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P2_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.357e-12
Identity = 39/124 (31.45%), Postives = 66/124 (53.23%), Query Frame = 3
Query:   90 IRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD-DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK 458
            I ING GRIGR+V R+ LQ  ++ +VA+N  +   + + ++  YD+ HG+   + LKV+  +  L  G+  + +   RNPE +PW E   +  +++TG F                V+++ PSK
Sbjct:    5 IAINGMGRIGRMVLRIALQNKNLNVVAINASY-PPETIAHLINYDTTHGK---YNLKVEPIENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLTGPSK 124          
The following BLAST results are available for this feature:
BLAST of FC930275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
G3P_ENTAE3.571e-1334.71Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P3_ECO574.664e-1334.68Glyceraldehyde-3-phosphate dehydrogenase C OS=Esch... [more]
G3P_STRAU1.039e-1236.22Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3PA_SPIOL1.039e-1232.86Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P3_ANASP1.357e-1230.71Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P2_STAAW1.357e-1231.45Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAS1.357e-1231.45Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAR1.357e-1231.45Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAN1.357e-1231.45Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAM1.357e-1231.45Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC34005F11EF PostHarvC1 Citrus clementina cDNA clone C34005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930275 ID=FC930275; Name=FC930275; organism=Citrus clementina; type=EST; length=513bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCAGAATTAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTTGTTGTGGGTGTCAATGAGCACGAGTA
CAAACCAGAGCTC
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