FC930275

Overview
NameFC930275
Unique NameFC930275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P2_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain COL) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.357e-12
Identity = 39/124 (31.45%), Postives = 66/124 (53.23%), Query Frame = 3
Query:   90 IRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD-DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK 458
            I ING GRIGR+V R+ LQ  ++ +VA+N  +   + + ++  YD+ HG+   + LKV+  +  L  G+  + +   RNPE +PW E   +  +++TG F                V+++ PSK
Sbjct:    5 IAINGMGRIGRMVLRIALQNKNLNVVAINASY-PPETIAHLINYDTTHGK---YNLKVEPIENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLTGPSK 124          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.557e-12
Identity = 47/138 (34.06%), Postives = 68/138 (49.28%), Query Frame = 3
Query:   81 KVKIRINGFGRIGRLVARVILQRDD---VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFCCG 482
            K+K+ INGFGRIGR   R    R D   ++++A+ND        +++ KYDS  G +   ++K   D  +    K + V   RNP  +PW E G + V+E TGVF                V+I+AP K D P +  G
Sbjct:   67 KLKVAINGFGRIGRNFLRCWHGRGDASPLDVIAINDTG-GVKQASHLLKYDSTLGIFDA-DVKPVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVG 202          

HSP 2 Score: 21.1718 bits (43), Expect = 1.557e-12
Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = 1
Query:  472 FVVGVNEHEYKPE 510
            +VVGVN  +Y P+
Sbjct:  199 YVVGVNADQYNPD 211          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: E4PD_SHEPW (D-erythrose-4-phosphate dehydrogenase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=epd PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.772e-12
Identity = 38/127 (29.92%), Postives = 71/127 (55.91%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS 455
            +++ ING+GRIGR + R + +   RD +++VA+N+     + M ++ +YD+ HG++ H ++K+ D++ ++ G+  + +    NP  +PW E   + V E+TGV                 V+IS PS
Sbjct:    2 IRVAINGYGRIGRSILRAVYESAKRDRIQIVAINE-LAKPEAMLHLTQYDTTHGRF-HTQVKL-DEQHMIIGDDAIKLLHEPNPANLPWQEMDIDIVFEATGVINDRQACEAHIEAGARQVLISHPS 125          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P3_ECOLI (Putative glyceraldehyde-3-phosphate dehydrogenase C OS=Escherichia coli (strain K12) GN=gapC PE=5 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.315e-12
Identity = 42/124 (33.87%), Postives = 68/124 (54.84%), Query Frame = 3
Query:   87 KIRINGFGRIGRLV-ARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS 455
            K+ INGFGRIGRLV  R++  + ++++VA+ND   +   + Y+ K+DS +G +       +D  +L+   K + V+  +  + IPW   GAE +VE TG +T               V+ISAP+
Sbjct:    3 KVGINGFGRIGRLVLGRLLEVKSNIDVVAIND-LTSPKILAYLLKHDSNYGPFPWSVDFTED--SLIVDGKSIAVYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPA 123          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: E4PD_SHEHH (D-erythrose-4-phosphate dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=epd PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.315e-12
Identity = 38/129 (29.46%), Postives = 72/129 (55.81%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            +++ ING+GRIGR + R + +   RD +++VA+N+     + M ++ +YD+ HG++ H ++K+ D++ ++ G+  + +    NP  +PW E   + V E+TGV                 V+IS PS +
Sbjct:    2 IRVAINGYGRIGRSILRALYESAKRDRIQIVAINE-LAKPEAMLHLTQYDTTHGRF-HTQVKL-DNQHMIIGDDAIKLLHEPNPANLPWKELDIDIVYEATGVINDRQECEAHLKAGAKQVLISHPSSN 127          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: E4PD_AERHH (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=epd PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.315e-12
Identity = 37/104 (35.58%), Postives = 69/104 (66.35%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQ--RD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF 386
            +KI ING+GRIGR V R + +  RD ++++VA+N+     + M ++ ++D+ HG++ HH +++  + ++L GE  +++F  R+P  +PW   G + V++ TGVF
Sbjct:    2 IKIAINGYGRIGRNVLRALYESGRDKNIKIVAINE-LAAPEAMVHLTRFDTSHGRF-HHPVQLAGN-SMLVGEDLISLFAERDPSRLPWRALGVDVVLDCTGVF 102          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P3_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap3 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.948e-12
Identity = 38/127 (29.92%), Postives = 67/127 (52.76%), Query Frame = 3
Query:   81 KVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD 461
            K+++ INGFGR+GRL  R      ++E V +N+         ++ K+DSVHG+W   E++ + ++ L+    P++      PE++PW + G + V+E +G F                VI++AP K+
Sbjct:    2 KIRVGINGFGRMGRLALRAAWGWPELEFVHINEIKGGAVAAAHLLKFDSVHGRWT-PEVEAEGERVLI-DSTPLSFSEYGKPEDVPWEDFGVDLVLECSGKFRTPATLDPYFKRGVQKVIVAAPVKE 126          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 4.453e-12
Identity = 45/128 (35.16%), Postives = 65/128 (50.78%), Query Frame = 3
Query:   87 KIRINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMT--YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK 458
            ++ INGFGRIGR   R  L R D  +E+V +ND   T+D  T  ++ +YDS+ G  K       D+ ++    K +     RNP  +PWAE   + V+E+TGVF                V+I+AP K
Sbjct:    3 RVAINGFGRIGRNFLRCWLGRTDSQLEVVGIND---TSDPRTNAHLLRYDSMLG--KLDADISADENSITVNGKTIKCVSDRNPLNLPWAEWNVDLVIEATGVFVTHEGATKHVQAGAKKVLITAPGK 125          

HSP 2 Score: 25.409 bits (54), Expect = 4.453e-12
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  472 FVVGVNEHEYKPE 510
            +VVGVN HEYK E
Sbjct:  132 YVVGVNAHEYKHE 144          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 5.157e-12
Identity = 47/137 (34.31%), Postives = 68/137 (49.64%), Query Frame = 3
Query:   81 KVKIRINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFCCG 482
            K+K+ INGFGRIGR   R    R D  ++++A+ND        +++ KYDS  G +   ++K   +  +    K + V   RNP  +PW E G + V+E TGVF                VII+AP K D P +  G
Sbjct:   61 KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTG-GVKQASHLLKYDSTLGIFDA-DVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVG 195          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P1_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MW2) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.157e-12
Identity = 44/124 (35.48%), Postives = 68/124 (54.84%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS 455
            VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V D    + G K V  F   +  ++PW +   + V+E TG +T               V+ISAP+
Sbjct:    3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPA 123          
The following BLAST results are available for this feature:
BLAST of FC930275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
G3P2_STAAC1.357e-1231.45Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3PA_MAIZE1.557e-1234.06Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
E4PD_SHEPW1.772e-1229.92D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P3_ECOLI2.315e-1233.87Putative glyceraldehyde-3-phosphate dehydrogenase ... [more]
E4PD_SHEHH2.315e-1229.46D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_AERHH2.315e-1235.58D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
G3P3_ANAVT3.948e-1229.92Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P2_SYNY34.453e-1235.16Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3PA_ARATH5.157e-1234.31Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P1_STAAW5.157e-1235.48Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC34005F11EF PostHarvC1 Citrus clementina cDNA clone C34005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930275 ID=FC930275; Name=FC930275; organism=Citrus clementina; type=EST; length=513bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCAGAATTAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTTGTTGTGGGTGTCAATGAGCACGAGTA
CAAACCAGAGCTC
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