FC930275

Overview
NameFC930275
Unique NameFC930275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_MUSPF (Glyceraldehyde-3-phosphate dehydrogenase OS=Mustela putorius furo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.215e-30
Identity = 67/133 (50.38%), Postives = 86/133 (64.66%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK+ +NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K ++ K ++ G K +++F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMF  G
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMG 132          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.215e-30
Identity = 71/133 (53.38%), Postives = 87/133 (65.41%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK+ INGFGRIGR+V R  ++  +VE+VAVNDPFI T Y  YM KYDS HG++K  ++K  D+   + G K V  +  R+P  IPWAETGA+YV+ESTGVFT               VIISAPS DAPMF  G
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFK-GDVKFSDNGLDVDG-KHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMG 133          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_CANFA (Glyceraldehyde-3-phosphate dehydrogenase OS=Canis familiaris GN=GAPDH PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 3.215e-30
Identity = 67/133 (50.38%), Postives = 86/133 (64.66%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK+ +NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K ++ K ++ G K +++F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMF  G
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMG 132          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.215e-30
Identity = 68/133 (51.13%), Postives = 84/133 (63.16%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            V++ INGFGRIGR+V R      DV++VA+NDPFI  DYM YM KYD+VHG++    ++ KD K ++ G   + V   R+P  IPW   GA+YVVESTGVFT               VIISAPS DAPMF CG
Sbjct:    3 VQVGINGFGRIGRIVLRATESNKDVQVVAINDPFIPLDYMVYMLKYDTVHGRF-DGSVEAKDGKLVVNGH-AIAVSAERDPTSIPWGSAGADYVVESTGVFTTTEAASAHLKGGAKKVIISAPSADAPMFVCG 133          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.199e-30
Identity = 67/133 (50.38%), Postives = 85/133 (63.91%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            + + INGFGRIGRLV RV L R D+++VA+NDPFI  +Y  YMFKYDS H  +K  E+    +K  + G K +TVF  R+P  IPW + G +YV+ESTGVFT               V+I+APSKDAPMF  G
Sbjct:    3 ITVGINGFGRIGRLVLRVALSRADIKVVAINDPFIAPEYAAYMFKYDSTHKAYK-GEVSASGNKINIDG-KEITVFQERDPVNIPWGKAGVDYVIESTGVFTTLEGAQKHIDAGAKKVVITAPSKDAPMFVVG 133          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 4.199e-30
Identity = 68/133 (51.13%), Postives = 86/133 (64.66%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK+ +NGFGRIGRLV R  +    V++VA+NDPFI  +YM YMFKYDS HG ++   +K ++ K ++ G   +T+F  R+P  I WA+ GAEYVVESTGVFT               VIISAPS DAPMF  G
Sbjct:    2 VKVGVNGFGRIGRLVTRAAILSAKVQVVAINDPFIDLNYMVYMFKYDSTHGHFR-GTVKAENGKLVING-NAITIFQERDPSNIKWADAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMG 132          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.484e-30
Identity = 69/133 (51.88%), Postives = 87/133 (65.41%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK+ INGFGRIGR+V R  ++ +DVE+VAVNDPFI   Y  YM KYDS HGQ+K  ++KV+ +   + G K +  +  ++P  IPW+ETGA YVVESTGVFT               V+ISAPS DAPMF  G
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSQHGQFK-GDIKVEGNDLTING-KTIRFYTEKDPANIPWSETGAYYVVESTGVFTTTDKAKAHLKGGAKKVVISAPSADAPMFVMG 133          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.484e-30
Identity = 71/132 (53.79%), Postives = 82/132 (62.12%), Query Frame = 3
Query:   87 KIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            KI INGFGRIGRLV R  L +   E+VAVNDPFI  +YM Y+FKYDS HG++K       D   L+   K +TVF  R+P  I WA  GAEY+VESTGVFT               V+ISAPS DAPMF CG
Sbjct:    3 KIGINGFGRIGRLVLRAALDKG-AEVVAVNDPFIDVNYMVYLFKYDSTHGRFKG--TVAADGGFLVVNGKKITVFCERDPTNINWASAGAEYIVESTGVFTTIDKASAHFKGGAKKVVISAPSADAPMFVCG 131          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.484e-30
Identity = 71/133 (53.38%), Postives = 84/133 (63.16%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK+ INGFGRIGR+V R  ++ +DVE+VAVNDPFI   Y  YM KYDS HGQ+K  ++KV D   L    K V     ++P  IPW+ETGA YVVESTGVFT               V+ISAPS DAPMF  G
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSTHGQFK-GDIKV-DGNNLTVNGKTVRFHMEKDPANIPWSETGAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPSADAPMFVMG 133          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 5.484e-30
Identity = 68/133 (51.13%), Postives = 85/133 (63.91%), Query Frame = 3
Query:   84 VKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            VK+ +NGFGRIGRLV R  +    V++VA+NDPFI  +YM YMFKYDS HG +K   +K ++ K ++ G   +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMF  G
Sbjct:    2 VKVGVNGFGRIGRLVTRAAVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGHFK-GTVKAENGKLVING-NAITIFQERDPSNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMG 132          
The following BLAST results are available for this feature:
BLAST of FC930275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
G3P_MUSPF3.215e-3050.38Glyceraldehyde-3-phosphate dehydrogenase OS=Mustel... [more]
G3P_COCIM3.215e-3053.38Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_CANFA3.215e-3050.38Glyceraldehyde-3-phosphate dehydrogenase OS=Canis ... [more]
G3P1_RHIRA3.215e-3051.13Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P_PICPA4.199e-3050.38Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_COLLI4.199e-3051.13Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3P_PHANO5.484e-3051.88Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_GLOMM5.484e-3053.79Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3P_CURLU5.484e-3053.38Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_COTJA5.484e-3051.13Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]

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Properties
Property NameValue
Genbank descriptionC34005F11EF PostHarvC1 Citrus clementina cDNA clone C34005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930275 ID=FC930275; Name=FC930275; organism=Citrus clementina; type=EST; length=513bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCAGAATTAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTTGTTGTGGGTGTCAATGAGCACGAGTA
CAAACCAGAGCTC
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