FC930278

Overview
NameFC930278
Unique NameFC930278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930278 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.320e-60
Identity = 111/146 (76.03%), Postives = 122/146 (83.56%), Query Frame = 3
Query:   78 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 515
            MGK+KIGINGFGRIGRLVARV LQ DDVELVAVNDPFITT+YMTYMFKYD+VHG WKH ++K+KDDKTLLFGEKPVTVFGVRNPEEIPW E GA+YVVESTGVFT               V+ISAPSKDAPMFVVGVNE +Y  ++
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTEYMTYMFKYDTVHGHWKHSDIKLKDDKTLLFGEKPVTVFGVRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKYTSDV 146          
BLAST of FC930278 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 3.958e-60
Identity = 112/146 (76.71%), Postives = 119/146 (81.51%), Query Frame = 3
Query:   78 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 515
            M K+KIGINGFGRIGRLVARV LQ DDVELVAVNDPFI+TDYMTYMFKYD+VHGQWKHHE+KVKD KTLLFGEK V VFG RNPEEIPW   GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNE EYK ++
Sbjct:    1 MAKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFISTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWGSVGAEYVVESTGVFTDQEKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKSDI 146          
BLAST of FC930278 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 8.817e-60
Identity = 110/146 (75.34%), Postives = 121/146 (82.88%), Query Frame = 3
Query:   78 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 515
            MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHGQWKH ++ +KD KTLLFGEKPVTVFG+RNPEEIPW E GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNE +Y  ++
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIALKDSKTLLFGEKPVTVFGIRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKYTSDV 146          
BLAST of FC930278 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.152e-59
Identity = 109/145 (75.17%), Postives = 119/145 (82.07%), Query Frame = 3
Query:   81 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 515
            GK+KIGINGFGRIGRLVARV L RDD+ELV VNDPFI+TDYM+YMFKYDSVHG+WKHHE+ VKD KTLLFGEK V VFG RNPEEIPW E GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNEH+YK ++
Sbjct:    5 GKIKIGINGFGRIGRLVARVALTRDDIELVGVNDPFISTDYMSYMFKYDSVHGKWKHHEVNVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSKDAPMFVVGVNEHQYKSDV 149          
BLAST of FC930278 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.152e-59
Identity = 109/146 (74.66%), Postives = 121/146 (82.88%), Query Frame = 3
Query:   78 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 515
            MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHGQWKH ++K+KD KTLL GEKPVTVFG+RNP+EIPWAE GAEYVVESTGVFT               V+ISAPSKDAPMFV GVNE +Y  ++
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDI 146          
BLAST of FC930278 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.152e-59
Identity = 109/146 (74.66%), Postives = 121/146 (82.88%), Query Frame = 3
Query:   78 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 515
            MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHGQWKH ++K+KD KTLL GEKPVTVFG+RNP+EIPWAE GAEYVVESTGVFT               V+ISAPSKDAPMFV GVNE +Y  ++
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDI 146          
BLAST of FC930278 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.504e-59
Identity = 111/146 (76.03%), Postives = 121/146 (82.88%), Query Frame = 3
Query:   78 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 515
            M KVK+GINGFGRIGRLVARVILQRDD ELVAVNDPFI+TDYMTYMFKYDSVHGQ K HE+K+KD+KTLLFGE PV VFG RNPEEIPW + GA++VVESTGVFT               V+ISAPSKDAPMFVVGVNEHEYK +L
Sbjct:    1 MAKVKVGINGFGRIGRLVARVILQRDDCELVAVNDPFISTDYMTYMFKYDSVHGQCKSHEIKLKDEKTLLFGETPVAVFGCRNPEEIPWGQAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDL 146          
BLAST of FC930278 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 4.376e-59
Identity = 112/143 (78.32%), Postives = 119/143 (83.22%), Query Frame = 3
Query:   84 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 512
            K+KIGINGFGRIGRLVARV L+RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWK+ EL VKD  TLLFG+KPVTVF  RNPEEIPWA TGA+ +VESTGVFT               VIISAPSKDAPMFVVGVNE+EYKPE
Sbjct:    4 KIKIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELTVKDSNTLLFGQKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPE 146          
BLAST of FC930278 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 7.464e-59
Identity = 110/145 (75.86%), Postives = 120/145 (82.76%), Query Frame = 3
Query:   81 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 515
            GK+KIGINGFGRIGRLVARV LQRDD+ELVAVNDPFI+T+ +T +FKYDSVHGQWK HE+KVKD+KTLLFGEK V VFG RNPEEIPW E GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNEHEYK +L
Sbjct:    5 GKIKIGINGFGRIGRLVARVALQRDDIELVAVNDPFISTESLTSLFKYDSVHGQWKKHEVKVKDEKTLLFGEKHVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDL 149          
BLAST of FC930278 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 7.464e-59
Identity = 108/146 (73.97%), Postives = 120/146 (82.19%), Query Frame = 3
Query:   78 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 515
            MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHG WKH ++ +KD KTLLFG+KPVTVFG+RNPEEIPW E GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNE +Y  ++
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGHWKHSDITLKDSKTLLFGDKPVTVFGIRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKYTSDV 146          
The following BLAST results are available for this feature:
BLAST of FC930278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
G3PX_HORVU2.320e-6076.03Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE3.958e-6076.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE8.817e-6075.34Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY1.152e-5975.17Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ1.152e-5974.66Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI1.152e-5974.66Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR1.504e-5976.03Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA4.376e-5978.32Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA7.464e-5975.86Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE7.464e-5973.97Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC34005G02EF PostHarvC1 Citrus clementina cDNA clone C34005G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930278 ID=FC930278; Name=FC930278; organism=Citrus clementina; type=EST; length=515bp
GAGACACGACTGCACTCTCTACTCTCTACAACTTTCTTCACCACTCTTTC
ACCGCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAAT
CAACGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGA
GGGACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGAT
TACATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCA
CCATGAATTGAAGGTTAAGGACGACAAGACCCTTCTCTTTGGTGAGAAGC
CTGTCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAG
ACTGGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACTGACAAGGA
TAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAG
CCCCCAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAG
TACAAACCAGAGCTC
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