FC930306

Overview
NameFC930306
Unique NameFC930306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31
Identity = 80/209 (38.28%), Postives = 116/209 (55.50%), Query Frame = 1
Query:   64 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYFGKMDKTDDSGLASYVANQIDRSLNWKD 687
            +++A A+E+L K   D+   GA+D  T  +N  AF RI  RPR LRDVS++D  TT+ G  IS PI IAPT F  +  P+GE          G     S++A+ S+E++    P G+R+FQLYV  D  ++ QL++R E  GFKA+ +T+DTP  G R  DI+N+  L  +LTL + +    G       + +  +    I  SL W D
Sbjct:    8 DFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDTRTTIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAAPEGLRWFQLYVHPDLQLNKQLIQRVESLGFKALVITLDTPVCGNRRHDIRNQ--LRRNLTLTDLQSPKKG-------NAIPYFQMTPISTSLCWND 207          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: HAOX2_MOUSE (Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.481e-28
Identity = 69/176 (39.20%), Postives = 106/176 (60.23%), Query Frame = 1
Query:   64 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKN 588
            +++A A+++L K  +D+    A+D  T  +N  AF RI  RPR LRDVSKID  TT+ G  I+ PI I+PTAF  +A  +GE               +SS+A+ +VE++ +  P G+ +FQLYV  D +++ Q+V+R E  GFKA+ +TVD P LG R  + ++   L  ++ LK+
Sbjct:    8 DFKAQAQKQLSKTSWDFIEGEADDGITYNDNLAAFRRIRLRPRYLRDVSKIDTRTTIQGQEINAPICISPTAFHSIAWADGEKSTAKAAQKANICYVISSYASYTVEDIVAAAPGGLHWFQLYVQPDWDINKQMVQRIEALGFKALVVTVDAPVLGNRRGNKRSLLDLEANIKLKD 183          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: LLDD2_MYCTU (Putative L-lactate dehydrogenase [cytochrome] 2 OS=Mycobacterium tuberculosis GN=lldD2 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.811e-26
Identity = 74/227 (32.60%), Postives = 112/227 (49.34%), Query Frame = 1
Query:   58 VMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY----------------EGLYFGKMDKTDDSGLASYVANQIDRSLNWKD 687
            + +   +AK + P+  +DY   GAED+ ++   R  F  I F P ILRDV+ +     VLG    +P  IAPT F ++ H EGE          G   +LS+ AT ++E++    P G ++FQLY+ +DR+    LV+R   AGF  + +TVD P  G R  D++N   +PP LTL+                  E L F  +D+   + +  Y+    D SL + D
Sbjct:   37 IQDLRRIAKRRTPRAAFDYADGGAEDELSIARARQGFRDIEFHPTILRDVTTVCAGWNVLGQPTVLPFGIAPTGFTRLMHTEGEIAGARAAAAAGIPFSLSTLATCAIEDLVIAVPQGRKWFQLYMWRDRDRSMALVRRVAAAGFDTMLVTVDVPVAGARLRDVRNGMSIPPALTLRTVLDAMGHPRWWFDLLTTEPLAFASLDRWPGT-VGEYLNTVFDPSLTFDD 262          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: MDLB_PSEPU ((S)-mandelate dehydrogenase OS=Pseudomonas putida GN=mdlB PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.298e-24
Identity = 63/177 (35.59%), Postives = 96/177 (54.24%), Query Frame = 1
Query:   55 NVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 585
            NV +Y  L +++LPKMVYDY   GAED++ ++ NR+ F +  F+P+ L DVS+  +   VLG   SMP++I PT       P+G+          G    LS+ +  S+E+++    G  +FQLYV   R +   +V +A   G+  + LT D    G RE D+ NRF +P   + K
Sbjct:    7 NVEDYRKLRQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLYVI-HREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPMSYSAK 182          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: LLDD_PSEFS (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas fluorescens (strain SBW25) GN=lldD PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.586e-22
Identity = 72/238 (30.25%), Postives = 107/238 (44.96%), Query Frame = 1
Query:   49 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLP-------------------------PHLTLKNYEGLYFGKMDKTDDSGLASYVANQIDRSLNWKD 687
            I++  +Y A A+ KLP+ ++DY   GA  + T++ N +  + I  R RILR+V  + + TTV G  + MP++++P     M    GE          G    LS+ +   +EEV+S      +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D  +    P                         PH  L N    Y GK    +D     ++AN  D S++WKD
Sbjct:    3 ISSASDYRAAAQRKLPRFLFDYIDGGAYAEHTMRANSSDLAEISLRQRILRNVDNLSLKTTVFGQELDMPVILSPVGLTGMYARRGEVQAAKAAANKGVPFCLSTVSVCPIEEVASQSARAIWFQLYVLKDRGFMRNALERAQAAGVTTLVFTVDMPTPGARYRDAHSGMSGPFAAQRRMLQAMTKPQWAFDVGLMGRPH-DLGNI-SKYLGKPTHLED--YIGWLANNFDPSISWKD 236          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: LLDD_PSEU2 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lldD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.343e-21
Identity = 71/238 (29.83%), Postives = 108/238 (45.38%), Query Frame = 1
Query:   49 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLP-------------------------PHLTLKNYEGLYFGKMDKTDDSGLASYVANQIDRSLNWKD 687
            I++  +Y A AK KLP+ ++DY   GA  + TL+ N +  + I  R R+L++V  + + T + G +++MPI+++P     M    GE               LS+ +  S+EEV+S      +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D  +    P                         PH  L N    Y GK    +D     ++AN  D S++WKD
Sbjct:    3 ISSASDYRAAAKRKLPRFLFDYIDGGAYAEHTLRANGSDLADISLRQRVLKNVDNVSLETRLFGESLAMPIILSPVGLSGMYARRGEVQVARAAANKRIPFCLSTVSVCSIEEVASQSDQAIWFQLYVLKDRGFMKNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGPYAAPRRILQAMTKPDWALNVGLLGRPH-DLGNI-SRYLGKATTLED--YVGWLANNFDPSISWKD 236          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: LLDD_SALTY (L-lactate dehydrogenase [cytochrome] OS=Salmonella typhimurium GN=lldD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.532e-20
Identity = 68/237 (28.69%), Postives = 108/237 (45.57%), Query Frame = 1
Query:   49 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YFGKMDKTDDSGLASYVANQIDRSLNWKD 687
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y GK    +D     ++AN  D S++WKD
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKD 236          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: LLDD_SALTI (L-lactate dehydrogenase [cytochrome] OS=Salmonella typhi GN=lldD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.532e-20
Identity = 68/237 (28.69%), Postives = 108/237 (45.57%), Query Frame = 1
Query:   49 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YFGKMDKTDDSGLASYVANQIDRSLNWKD 687
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y GK    +D     ++AN  D S++WKD
Sbjct:    3 ISATSDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTLKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKD 236          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: LLDD_SALSV (L-lactate dehydrogenase [cytochrome] OS=Salmonella schwarzengrund (strain CVM19633) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.532e-20
Identity = 68/237 (28.69%), Postives = 108/237 (45.57%), Query Frame = 1
Query:   49 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YFGKMDKTDDSGLASYVANQIDRSLNWKD 687
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y GK    +D     ++AN  D S++WKD
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTLKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKD 236          
BLAST of FC930306 vs. ExPASy Swiss-Prot
Match: LLDD_SALPK (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi A (strain AKU_12601) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.532e-20
Identity = 68/237 (28.69%), Postives = 108/237 (45.57%), Query Frame = 1
Query:   49 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YFGKMDKTDDSGLASYVANQIDRSLNWKD 687
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y GK    +D     ++AN  D S++WKD
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIQRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKD 236          
The following BLAST results are available for this feature:
BLAST of FC930306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
HAOX2_HUMAN2.441e-3138.28Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]
HAOX2_MOUSE1.481e-2839.20Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2... [more]
LLDD2_MYCTU1.811e-2632.60Putative L-lactate dehydrogenase [cytochrome] 2 OS... [more]
MDLB_PSEPU1.298e-2435.59(S)-mandelate dehydrogenase OS=Pseudomonas putida ... [more]
LLDD_PSEFS1.586e-2230.25L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEU21.343e-2129.83L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_SALTY2.532e-2028.69L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALTI2.532e-2028.69L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALSV2.532e-2028.69L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALPK2.532e-2028.69L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]

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Properties
Property NameValue
Genbank descriptionC34006A09EF PostHarvC1 Citrus clementina cDNA clone C34006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930306 ID=FC930306; Name=FC930306; organism=Citrus clementina; type=EST; length=687bp
GGTTGCTTAAGGAAGCCAAGCGAGAGCATTATGACTTATATATCGGAGAT
CACCAATGTTATGGAGTATGAGGCTCTTGCAAAGGAGAAATTGCCGAAGA
TGGTTTATGACTACTATGCATCAGGTGCTGAGGACCAGTGGACTCTTCAG
GAAAACCGCAATGCATTCTCTAGGATTCTATTTCGACCACGCATTCTTAG
AGATGTAAGCAAGATTGACATGACTACAACAGTCTTGGGCTTCAACATTT
CCATGCCCATCATGATTGCTCCAACGGCATTTCAGAAAATGGCTCATCCT
GAAGGGGAGTGTGCAACAGCAAGGGCAGCCTCAGCAGCTGGCACAATCAT
GACATTATCTTCATGGGCCACTTCCAGTGTCGAGGAAGTTTCTTCAACGG
GACCTGGAATTCGCTTTTTCCAACTCTATGTGACCAAGGACAGGAATGTG
GACGCACAGCTAGTAAAAAGAGCTGAAAGGGCTGGTTTTAAGGCGATTGC
CCTTACCGTCGATACTCCAAGGCTTGGCCGTCGGGAAGCTGATATTAAGA
ACAGATTTGTTTTGCCGCCACATCTGACTTTGAAGAACTATGAGGGCTTG
TATTTTGGCAAGATGGATAAGACTGATGACTCTGGATTAGCTTCGTATGT
TGCCAACCAAATTGACCGGTCACTGAACTGGAAGGAT
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