FC930316

Overview
NameFC930316
Unique NameFC930316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: INT4_ARATH (Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.637e-18
Identity = 56/135 (41.48%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  310 ACLGAILFGYHLGVVNGALEYLAKDLG-IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVG 711
            A +G +LFGY  GV++GAL ++ +D   + + T LQ  IVS  +AGA VG+  GG + DKFGR  +  +  V    GA + A A +   +I+GR+             PLYISE SP  IRGAL S N L I  G
Sbjct:   34 AGIGGLLFGYDTGVISGALLFIKEDFDEVDKKTWLQSTIVSMAVAGAIVGAAVGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMASMTSPLYISEASPARIRGALVSTNGLLITGG 168          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: MYCT_HUMAN (Proton myo-inositol cotransporter OS=Homo sapiens GN=SLC2A13 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.974e-18
Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 1
Query:  232 GDIEEATPFKPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            GD+E A   + Q+ ++   V      + LG  LFGY  GVV+GA+  L + L +  + + Q  +VSS +  A V +  GG+L   FGR     L +    AG+ + A A + +T++ GR++           VP+YI+E+SP  +RG L ++N LFI  G   A V
Sbjct:   43 GDLERAARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLKRQLSL--DALWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASV 206          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: INT2_ARATH (Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 57/142 (40.14%), Postives = 71/142 (50.00%), Query Frame = 1
Query:  289 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDL-GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVG 711
            VL     A +G +LFGY  GV++GAL Y+  D   +  NT LQ  IVS  +AGA VG+  GG   DK GR     +       GA + A A +   +++GRV             PLYISE SP  IRGAL S N   I  G
Sbjct:   28 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGG 169          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: INT1_ARATH (Probable inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 53/142 (37.32%), Postives = 75/142 (52.82%), Query Frame = 1
Query:  289 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIA-ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVG 711
            +L     A +G +LFGY  GV++GAL Y+  D  +  +++ LQ  IVS  L GA +G+  GG + D +GR +      V  AAGA + A A     +I GR+L            P+YI+E SP+ +RG L S N L I  G
Sbjct:   31 ILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTNVLMITGG 172          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: ARAE_BACSU (Arabinose-proton symporter OS=Bacillus subtilis GN=araE PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.440e-16
Identity = 53/148 (35.81%), Postives = 82/148 (55.41%), Query Frame = 1
Query:  277 SSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILA 720
            S G V+     A LG +L+GY   V++GA+ +L KDL  + +  ++G ++SS++ G  VG    G L+D+FGR +     A+  A  A + A +Q V T+II R++              YI+E +P  IRG+L S+ QLF  +GI A
Sbjct:   19 SMGFVILISCAAGLGGLLYGYDTAVISGAIGFL-KDL-YSLSPFMEGLVISSIMIGGVVGVGISGFLSDRFGRRKILMTAALLFAISAIVSALSQDVSTLIIARIIGGLGIGMGSSLSVTYITEAAPPAIRGSLSSLYQLFTILGISA 164          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: YFIG_BACSU (Putative metabolite transport protein yfiG OS=Bacillus subtilis GN=yfiG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 51/147 (34.69%), Postives = 75/147 (51.02%), Query Frame = 1
Query:  283 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAA 723
            G++     V+  G +LFGY  GV+NGAL ++A    +    V +G + SSLL GA  G+  GG L+D+ GR +T    A+   A    C  + +   MI  R L           VP +++EISP   RG + + N+L I +G L A
Sbjct:   19 GLLRTITLVSTFGGLLFGYDTGVINGALPFMATAGQLNLTPVTEGLVASSLLLGAAFGAMFGGRLSDRHGRRKTILYLALLFIAATLGCTFSPNASVMIAFRFLLGLAVGCASVTVPTFLAEISPAERRGRIVTQNELMIVIGQLLA 165          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GLCP_SYNY3 (Glucose transport protein OS=Synechocystis sp. (strain PCC 6803) GN=gtr PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 55/147 (37.41%), Postives = 75/147 (51.02%), Query Frame = 1
Query:  289 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            VL   GVA LG  LFG+   V+NGA+  L K      +++L G  VS  L G+ +G+F  G +AD+ GR +T  L AV     +       ++   I  RVL            P YI+E+SP  +RG LGS+ QL I  GI  AL+
Sbjct:   17 VLLISGVAALGGFLFGFDTAVINGAVAALQKHF--QTDSLLTGLSVSLALLGSALGAFGAGPIADRHGRIKTMILAAVLFTLSSIGSGLPFTIWDFIFWRVLGGIGVGAASVIAPAYIAEVSPAHLRGRLGSLQQLAIVSGIFIALL 161          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: PLT4_ARATH (Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 59/175 (33.71%), Postives = 86/175 (49.14%), Query Frame = 1
Query:  214 KAQASAGDIEEATPFKPQEKKSSGV---VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            K Q    D EE+   +  E ++S     V+     A L  +L GY +GV++GA+ ++ +DL I E  V    ++ SL   +  GS  GG  +D  GR  T  L A+    GA + A A S + ++IGR L            P+YI+EISP   RG   S  ++FI +GIL   V
Sbjct:   27 KYQRMDSDAEESQNHREAEARNSRTRKYVMACAFFASLNNVLLGYDVGVMSGAVLFIQQDLKITE--VQTEVLIGSLSIISLFGSLAGGRTSDSIGRKWTMALAALVFQTGAAVMAVAPSFEVLMIGRTLAGIGIGLGVMIAPVYIAEISPTVARGFFTSFPEIFINLGILLGYV 199          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: IOLT_BACSU (Major myo-inositol transporter iolT OS=Bacillus subtilis GN=iolT PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16
Identity = 51/141 (36.17%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  307 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            V+  G +LFGY  GV+NGAL Y+ +   +  N   +G + SSLL GA +G+  GG ++D  GR +     AV        C  A +V  MII R +           VP Y++E+SP   RG + + N+L I  G L A V
Sbjct:   17 VSTFGGLLFGYDTGVLNGALPYMGEPDQLNLNAFTEGLVTSSLLFGAALGAVFGGRMSDFNGRRKNILFLAVIFFISTIGCTFAPNVTVMIISRFVLGIAVGGASVTVPAYLAEMSPVESRGRMVTQNELMIVSGQLLAFV 157          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: ARAE_KLEOX (Arabinose-proton symporter OS=Klebsiella oxytoca GN=araE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16
Identity = 47/157 (29.94%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  262 PQEKKSSGVVLPFVGVAC-LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            P+ ++ +  +  FV +A  +  +LFG  +GV+ GAL ++     ++    LQ W+VSS++ GA +G+   G L+ + GR  +  + AV   AG+   A A SV+ +++ R++            PLY+SE++   +RG + S+ QL + +GI+ A +
Sbjct:   12 PRTQRDTRRMNQFVSIAAAVAGLLFGLDIGVIAGALPFITDHFVLSSR--LQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMVGAVLFVAGSVGSAFATSVEMLLVARIVLGVAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVMAFL 166          
The following BLAST results are available for this feature:
BLAST of FC930316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
INT4_ARATH7.637e-1841.48Inositol transporter 4 OS=Arabidopsis thaliana GN=... [more]
MYCT_HUMAN9.974e-1833.73Proton myo-inositol cotransporter OS=Homo sapiens ... [more]
INT2_ARATH2.902e-1740.14Probable inositol transporter 2 OS=Arabidopsis tha... [more]
INT1_ARATH3.790e-1737.32Probable inositol transporter 1 OS=Arabidopsis tha... [more]
ARAE_BACSU1.440e-1635.81Arabinose-proton symporter OS=Bacillus subtilis GN... [more]
YFIG_BACSU3.208e-1634.69Putative metabolite transport protein yfiG OS=Baci... [more]
GLCP_SYNY33.208e-1637.41Glucose transport protein OS=Synechocystis sp. (st... [more]
PLT4_ARATH4.190e-1633.71Probable polyol transporter 4 OS=Arabidopsis thali... [more]
IOLT_BACSU7.148e-1636.17Major myo-inositol transporter iolT OS=Bacillus su... [more]
ARAE_KLEOX7.148e-1629.94Arabinose-proton symporter OS=Klebsiella oxytoca G... [more]

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Properties
Property NameValue
Genbank descriptionC34006B07EF PostHarvC1 Citrus clementina cDNA clone C34006B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930316 ID=FC930316; Name=FC930316; organism=Citrus clementina; type=EST; length=730bp
GACGCAATCAAAGCGAGTGTATGCTTTGACGCCCGCAATCGGAGGCGTGC
GTGCGTGTTGGCTGCTGGCTTTGCTAACACCAGAAGTGTTGCTTTGAATT
GTAATTTTACTAGTAATAATAGTATTTGCATGAGAGATATGGGAATGAAG
CTCACACGTGCCACTCAGGGCGTTGAAACTCTGTTTAGATCAACGGTTAA
GCCCCGATCGGTGAAAGCTCAAGCCTCCGCTGGAGACATTGAAGAAGCTA
CTCCTTTCAAGCCTCAGGAGAAAAAATCTTCTGGAGTAGTTTTGCCTTTT
GTTGGGGTTGCTTGTTTGGGAGCTATTTTATTTGGTTACCACTTAGGGGT
TGTAAATGGCGCTCTTGAATACCTTGCCAAGGACCTTGGGATTGCTGAAA
ACACTGTCCTGCAAGGATGGATTGTCAGCTCATTACTTGCTGGTGCCACT
GTTGGTTCTTTTACTGGAGGATCATTGGCTGACAAATTTGGCAGAACAAG
GACTTTTCAGTTAGACGCAGTTCCCCTCGCAGCTGGAGCATTTCTATGTG
CTACTGCCCAGAGTGTACAGACTATGATAATTGGCCGCGTACTGGCAGGC
ATTGGAATTGGCATCTCATCTGCCATTGTACCACTTTATATATCTGAGAT
CTCACCAAACTGAATTCGTGGTGCTCTTGGATCAGTAAACCAACTTTTTA
TATGTGTTGGGATTCTTGCAGCATTGGTAG
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