FC930318

Overview
NameFC930318
Unique NameFC930318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930318 vs. ExPASy Swiss-Prot
Match: RCO3_NEUCR (Probable glucose transporter rco-3 OS=Neurospora crassa GN=rco-3 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 55/171 (32.16%), Postives = 76/171 (44.44%), Query Frame = 1
Query:  184 GNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANV 696
            G+  P ++V   VA  GGL+ GYD G   G+ +M SF K  F + Y     N    +Y K  +  + M +                    +GR+ S+                   I +L+ GR + G GIG  +  VPLY SEMAP   RG L   +QLSIT+G+L A V
Sbjct:   16 GSSAPAIMVGLFVAT-GGLLLGYDTGTINGILAMKSF-KDHFSTGYI--DGNGQPGIYPKESALIVAMLSAGTAIGALLAAPLGDH----YGRRRSLIGAIGIFVIGAILQVCAYNIDLLVAGRTVAGVGIGIVSVLVPLYQSEMAPKWIRGTLVCTYQLSITMGLLAAAV 178          
BLAST of FC930318 vs. ExPASy Swiss-Prot
Match: INT4_ARATH (Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 49/162 (30.25%), Postives = 74/162 (45.68%), Query Frame = 1
Query:  193 TPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVG 678
            TPY++   + A +GGL+FGYD G+  G      F+K+ F  V +K              S  ++M                  +  +FGR++S+                    W++IVGR+ +GFG+G A+ + PLY+SE +P R RGAL     L IT G
Sbjct:   24 TPYIMRLALSAGIGGLLFGYDTGVISGALL---FIKEDFDEVDKKTWLQ----------STIVSMAVAGAIVGAAVGGW----INDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMASMTSPLYISEASPARIRGALVSTNGLLITGG 168          
BLAST of FC930318 vs. ExPASy Swiss-Prot
Match: INT3_ARATH (Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 49/162 (30.25%), Postives = 74/162 (45.68%), Query Frame = 1
Query:  193 TPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVG 678
            TPY++   + A +GGL+FGY+ G+  G              +Y K++  E  N    +  E +   T                   +FGR++S+                    W++I+GRLL+GFG+G A+ + PLY+SEM+P R RGAL     L IT G
Sbjct:   23 TPYIMRLALSAGIGGLLFGYNTGVIAGAL------------LYIKEEFGEVDNK--TWLQEIIVSMTVAGAIVGAAIGGWY---NDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLYISEMSPARIRGALVSTNGLLITGG 167          
The following BLAST results are available for this feature:
BLAST of FC930318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RCO3_NEUCR3.515e-1232.16Probable glucose transporter rco-3 OS=Neurospora c... [more]
INT4_ARATH3.515e-1230.25Inositol transporter 4 OS=Arabidopsis thaliana GN=... [more]
INT3_ARATH4.591e-1230.25Probable inositol transporter 3 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionC34006B09EF PostHarvC1 Citrus clementina cDNA clone C34006B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930318 ID=FC930318; Name=FC930318; organism=Citrus clementina; type=EST; length=708bp
GGTATCTTCTTTCTTTATTGCCTGCTTACTCTTTAGTCTCCAATTTTCTT
GTTTATTTTCTTCTTCTTCTTCTTCTCCGTGTCATCGTTTCTTTATCTTC
TTAGAATCAAGAAAAAAAAGGAAAAGGCTGAAAAAATGCCTGCTGTTGGA
GGATTTGATAAGGGTAACGGGAAAGAGTACCCCGGAAACCTCACCCCATA
CGTGTTAGTAACATGTATTGTTGCTGCCATGGGTGGCCTCATCTTTGGTT
ATGATATTGGGATTTCAGGTGGTGTGACCTCAATGCCTTCATTTTTGAAG
AAGTTTTTCCCGTCGGTGTACAGGAAGCAACAGGCGAACGAGTCAACGAA
TCTGTACTGTAAGTATGACAGTGAGACGTTGACTATGTTCACGTCGTCGC
TTTACTTGGCTGCTCTATTATCATCACTGGTGGCGTCAAGGGTGACGAGA
CAATTCGGAAGAAAACTGTCTATGTTTTTCGGCGGTATCCTGTTTCTTGC
CGGTGCCTTGCTCAATGGCTTCGCCCAAGCCATTTGGATGCTTATTGTTG
GCCGACTTTTGCTCGGTTTCGGCATCGGTTTCGCTAACCAGTCCGTGCCA
CTCTACCTCTCTGAGATGGCTCCATACAGATTCAGAGGTGCTTTGAACAT
TGGGTTTCAGTTATCAATCACAGTTGGAATTCTTATAGCAAATGTGTTTG
ACTACTTC
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