FC930319

Overview
NameFC930319
Unique NameFC930319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: PECR_MOUSE (Peroxisomal trans-2-enoyl-CoA reductase OS=Mus musculus GN=Pecr PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.987e-20
Identity = 65/209 (31.10%), Postives = 104/209 (49.76%), Query Frame = 2
Query:   41 ESPFKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALR-----SLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHY---TASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            +S   A +LK +VA++TGGG+GIG  +S +    G +V I  R+   L AAV  LR     S   +    + ++R++E    +V+ST   +GK++ LVN   G F+   ED++  G+  V++ +  GTF MC E      +            I+NI   L+    TA+    H          +T+++AL W A   +R+N +APG I
Sbjct:    8 QSYLAAGLLKNQVAVVTGGGTGIGKAVSRELLHLGCNVVIASRKLDRLTAAVDELRASLPPSSSAEVSAIQCNIRKEEEVSNLVKSTLAKYGKINFLVNNGGGQFMAPVEDITAKGWHAVIETNLTGTFYMCKEVYNSWMR-------EHGGSIVNIIVLLNNGFPTAA----HTGAAREGVYNLTKSMALAW-ASSGVRINCVAPGTI 204          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: PECR_RAT (Peroxisomal trans-2-enoyl-CoA reductase OS=Rattus norvegicus GN=Pecr PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 66/209 (31.58%), Postives = 104/209 (49.76%), Query Frame = 2
Query:   41 ESPFKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALR-----SLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHY---TASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            +S   A +L+ +VA++TGG +GIG  IS +    G +V I  R+   L AAV  LR     S   +    + ++R++E    +V+ST   +GK++ LVN A G F+  AED++  G++ V++ +  GTF MC       K             I+NI   L+    TA+    H          +T+ +AL W A   +R+N +APG I
Sbjct:    8 QSYLAAGLLQNQVAVVTGGATGIGKAISRELLHLGCNVVIASRKLDRLTAAVDELRASQPPSSSTQVTAIQCNIRKEEEVNNLVKSTLAKYGKINFLVNNAGGQFMAPAEDITAKGWQAVIETNLTGTFYMC-------KAVYNSWMKDHGGSIVNIIVLLNNGFPTAA----HSGAARAGVYNLTKTMALTW-ASSGVRINCVAPGTI 204          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: PECR_PONAB (Peroxisomal trans-2-enoyl-CoA reductase OS=Pongo abelii GN=PECR PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.725e-19
Identity = 60/199 (30.15%), Postives = 101/199 (50.75%), Query Frame = 2
Query:   62 ILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRS-----LGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            +L+G+VA++TGG +GIG  I  +  + G++V I  R+ + L +A   L++        + +  + ++R +E    +V+ST + FGK++ LVN   G FL  AE +S  G+  V++ +  GTF MC       K             I+NI  ++  T     +H          +T++LALEW     +R+N +APG I
Sbjct:   15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAAGELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDIFGKINFLVNNGGGQFLSLAEHISSKGWHAVLETNLTGTFYMC-------KAVYSSWMKEHGGSIVNIIVSIK-TGLPLAVHSGAARAGVYNLTKSLALEWACS-GVRINCVAPGVI 204          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: DECR_HUMAN (2,4-dienoyl-CoA reductase, mitochondrial OS=Homo sapiens GN=DECR1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.248e-18
Identity = 66/202 (32.67%), Postives = 96/202 (47.52%), Query Frame = 2
Query:   68 KGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRS-LGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 670
            +GKVA ITGGG+G+G  ++T     GA   I  R+  VL A    + S  G K    + DVR  +  +  V    +  G  +I++N AAGNF+   E LSPN ++T+ DI   GT  +  E  K L K             L+I+     T S + +           ++++LA EWG  Y +R N I PGPI      ++L
Sbjct:   58 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIK------AQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWG-KYGMRFNVIQPGPIKTKGAFSRL 252          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: PECR_HUMAN (Peroxisomal trans-2-enoyl-CoA reductase OS=Homo sapiens GN=PECR PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.007e-18
Identity = 60/199 (30.15%), Postives = 98/199 (49.25%), Query Frame = 2
Query:   62 ILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRS-----LGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            +L+G+VA++TGG +GIG  I  +  + G++V I  R+ + L +A   L++        + +  + ++R +E    +V+ST + FGK++ LVN   G FL  AE +S  G+  V++ +  GTF MC       K             I+NI            +H          +T++LALEW     IR+N +APG I
Sbjct:   15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMC-------KAVYSSWMKEHGGSIVNIIVPTK-AGFPLAVHSGAARAGVYNLTKSLALEWACS-GIRINCVAPGVI 204          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: DECR_RAT (2,4-dienoyl-CoA reductase, mitochondrial OS=Rattus norvegicus GN=Decr1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.485e-17
Identity = 66/202 (32.67%), Postives = 93/202 (46.04%), Query Frame = 2
Query:   68 KGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRS-LGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 670
            +GKVA ITGGG+G+G  ++T     GA   I  R   VL A    + S  G K      DVR  +     V    +  G  D+++N AAGNF+  +E LSPNG++T+ DI   GT  +  E  K L K             L I+     + S + +           + ++LA EWG  Y +R N I PGPI      ++L
Sbjct:   58 QGKVAFITGGGTGLGKAMTTFLSSLGAQCVIASRNIDVLKATAEEITSKTGNKVYAIRCDVRDPDMVHNTVLELIKVAGHPDVVINNAAGNFISPSERLSPNGWKTITDIVLNGTAYVTIEIGKQLIK------AQKGAAFLAITTIYAESGSGFVMPSSSAKSGVEAMNKSLAAEWGR-YGMRFNIIQPGPIKTKGAFSRL 252          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: DECR_MOUSE (2,4-dienoyl-CoA reductase, mitochondrial OS=Mus musculus GN=Decr1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 66/205 (32.20%), Postives = 94/205 (45.85%), Query Frame = 2
Query:   59 DILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRS-LGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 670
            D  +GKVA ITGGG+G+G  ++T     GA   I  R   VL A    + S  G K      DVR  +     V    +  G  D+++N AAGNF+  +E L+PNG++T+ DI   GT  +  E  K L K             L I+     + S + +           + ++LA EWG  Y +R N I PGPI      ++L
Sbjct:   55 DAFQGKVAFITGGGTGLGKAMTTFLSTLGAQCVIASRNIDVLKATAEEISSKTGNKVHAIRCDVRDPDMVHNTVLELIKVAGHPDVVINNAAGNFISPSERLTPNGWKTITDIVLNGTAYVTLEIGKQLIK------AQKGAAFLAITTIYAESGSGFVMPSSSAKSGVEAMNKSLAAEWGR-YGMRFNIIQPGPIKTKGAFSRL 252          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: YWC4_CAEEL (Uncharacterized oxidoreductase W01C9.4 OS=Caenorhabditis elegans GN=W01C9.4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 65/204 (31.86%), Postives = 100/204 (49.02%), Query Frame = 2
Query:   41 ESPFKAD-ILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSL-GIKAVGFEGDVRRQEHAKKVVESTFEHFGKL-DILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            +SP   D   KGK+ L+TGGG+GIG  I+T F    A+V I  RR + L+     +  + G     F+ D++         +     FGK+ +ILVN AAGNF+++ E LS N + T++DI   GTF +  E  K                I +I+A      + + +           +T++LA EW + Y +R N ++PGPI
Sbjct:   14 KSPVLRDGAFKGKLVLVTGGGTGIGKAIATTFAHLRATVVIAARRMEKLEQTARDITKITGGTCEPFQMDIKDPGMVSDAFDKIDMKFGKVPEILVNNAAGNFIMATELLSSNAYGTIIDIVLKGTFNVTTELGK------RCIQNKTGASITSITAGYARAGAPFIVPSAVSKAGVETMTKSLATEW-SKYGLRFNAVSPGPI 210          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: DHGB_BACME (Glucose 1-dehydrogenase B OS=Bacillus megaterium GN=gdhB PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 63/202 (31.19%), Postives = 102/202 (50.50%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSAL----RSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASW-YQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTP 655
            L+GKV +ITG  +G+G  ++ +F    A V +  R K+  D A S L    + +G +A+  +GDV  +     +V+S  + FGKLD+++N A     VS+ ++S + +  V+D +  G F    EA+KY  +            ++N+S+   +   W   +H          +T  LALE+ A   IRVN I PG I +TP
Sbjct:    5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE--DEANSVLEEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGMENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVE------NDIKGTVINMSSVHEWKIPWPLFVHYAASKGGMKLMTETLALEY-APKGIRVNNIGPGAI-NTP 196          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: GRDH2_ARATH (Glucose and ribitol dehydrogenase homolog 2 OS=Arabidopsis thaliana GN=At3g05260 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.230e-17
Identity = 66/200 (33.00%), Postives = 94/200 (47.00%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVA---IMGRRKQVLDAAVSALRSLGIKA----VGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            L GKVAL+TGG SGIG  +   +   GASVA   + GR  +  +  +  L  +  +     +    D+  +E+ K+VVE     FG++D+LVN AA    VS ED+       V   +    F +   ALK++K+                S+ L YTA+   I            TR LAL+  A   IRVNG+APGP+
Sbjct:   37 LHGKVALVTGGDSGIGKAVCHCYALEGASVAFTYVKGREDKDAEETLRLLHEVKTREAKEPIMIATDLGFEENCKRVVEEVVNSFGRIDVLVNCAAEQHEVSIEDIDEARLERVFRTNIFSQFFLVKYALKHMKEGSSIINTTSVVAYAGNSSLLEYTATKGAI---------VSFTRGLALQL-APKGIRVNGVAPGPV 226          
The following BLAST results are available for this feature:
BLAST of FC930319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
PECR_MOUSE6.987e-2031.10Peroxisomal trans-2-enoyl-CoA reductase OS=Mus mus... [more]
PECR_RAT1.192e-1931.58Peroxisomal trans-2-enoyl-CoA reductase OS=Rattus ... [more]
PECR_PONAB7.725e-1930.15Peroxisomal trans-2-enoyl-CoA reductase OS=Pongo a... [more]
DECR_HUMAN2.248e-1832.672,4-dienoyl-CoA reductase, mitochondrial OS=Homo s... [more]
PECR_HUMAN5.007e-1830.15Peroxisomal trans-2-enoyl-CoA reductase OS=Homo sa... [more]
DECR_RAT2.485e-1732.672,4-dienoyl-CoA reductase, mitochondrial OS=Rattus... [more]
DECR_MOUSE3.245e-1732.202,4-dienoyl-CoA reductase, mitochondrial OS=Mus mu... [more]
YWC4_CAEEL4.239e-1731.86Uncharacterized oxidoreductase W01C9.4 OS=Caenorha... [more]
DHGB_BACME5.536e-1731.19Glucose 1-dehydrogenase B OS=Bacillus megaterium G... [more]
GRDH2_ARATH7.230e-1733.00Glucose and ribitol dehydrogenase homolog 2 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC34006B10EF PostHarvC1 Citrus clementina cDNA clone C34006B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930319 ID=FC930319; Name=FC930319; organism=Citrus clementina; type=EST; length=670bp
GCAAAAGCGGTCAGATAAAGAAATAAGCAAAATGTCGTTGGAATCTCCGT
TCAAGGCCGATATATTGAAAGGCAAAGTCGCTTTGATCACAGGAGGTGGT
TCGGGAATTGGGTTTGAGATATCAACCCAATTCGGTAAACATGGAGCTTC
AGTTGCAATCATGGGACGTCGCAAGCAAGTCCTTGATGCTGCTGTTTCTG
CTCTTCGGTCTCTTGGAATCAAGGCTGTTGGCTTTGAAGGAGATGTTCGT
AGGCAGGAACATGCGAAAAAAGTTGTGGAATCAACTTTTGAGCATTTTGG
GAAGCTTGACATTCTTGTGAATGCTGCGGCCGGCAACTTTCTTGTATCAG
CTGAGGATTTGTCCCCTAATGGGTTTCGAACAGTTATGGATATTGATTCT
GTCGGCACATTCACAATGTGCCATGAAGCACTTAAATATCTTAAAAAGGG
TGGACCTGGGAGAAGCTCAGCTGGTGGTGGATCCATTTTGAACATTAGTG
CTACTTTACATTATACAGCTTCTTGGTACCAAATACATGTAGCTGCAGCC
AAGGCAGCTGTTGATGCCATTACCAGAAACTTGGCACTGGAATGGGGAGC
TGACTATGATATTCGAGTCAATGGAATTGCCCCAGGCCCCATCGGTGATA
CCCCGGGCATGAATAAACTT
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