FC930319

Overview
NameFC930319
Unique NameFC930319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: GRDH_ORYSJ (Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica GN=Os05g0140800 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 62/212 (29.25%), Postives = 100/212 (47.17%), Query Frame = 2
Query:   38 LESPFKADILKGKVALITGGGSGIGFEISTQFGKHGASVA---IMGRRKQVLDAAVSALRSLGIKA-----VGFEGDVRRQEHAKKVVESTFEHF-GKLDILVNAAAGNF-LVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            ++S   A+ LK KVA++TGG SGIG  +   F   GA+VA   + G+ ++  +  + ALR +  +      +    D+   ++ +KVV+     + G +DILVN AA  +   S  D++ +    V   +    F M   A+K + +            I+N S+   Y  +   +            TR LAL+  A+  IRVNG+APGPI
Sbjct:   29 IQSYKPANKLKDKVAIVTGGDSGIGRAVCLCFALEGATVAFTYVKGQEEKDAEETLRALRDIRARTGAKDPMAIPADLGYDDNCRKVVDEVAGAYGGAIDILVNNAAEQYERPSITDITEDDLERVFRTNIFSYFFMSKHAVKRM-RDRRGGAGAGGCSIINTSSINAYKGNKTLLDYTATKGAIVAFTRALALQL-AEEGIRVNGVAPGPI 238          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: FABG_THEMA (3-oxoacyl-[acyl-carrier-protein] reductase OS=Thermotoga maritima GN=fabG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 58/202 (28.71%), Postives = 94/202 (46.53%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 670
            L+GKV LITG  SGIG   +  F + GA+V      K+ LD+ V     L  K   +  +V  ++  K+VVE   + +G++D+LVN A          +    +  V++++  G F +    + Y+ K            I+N+S+ +    +  Q +          +T+  A E  A  +IRVN +APG I +TP   KL
Sbjct:    3 LEGKVCLITGAASGIGKATTLLFAQEGATVIAGDISKENLDSLVKEAEGLPGKVDPYVLNVTDRDQIKEVVEKVVQKYGRIDVLVNNAGITRDALLVRMKEEDWDAVINVNLKGVFNVTQMVVPYMIK-------QRNGSIVNVSSVVGIYGNPGQTNYAASKAGVIGMTKTWAKEL-AGRNIRVNAVAPGFI-ETPMTEKL 195          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: TRNH_DATST (Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.195e-11
Identity = 55/193 (28.50%), Postives = 83/193 (43.01%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHF-GKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKK--XXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAP 634
            L+G  AL+TGG  GIG+ I  +    GA V    R +  LD  +   R  G K  G   DV      + ++ES    F GKL+IL+N A       A + +   +  +M  +   ++ +C  A   LK               ++ +  +  Y AS   I+          +T++LA EW  D  IRVN +AP
Sbjct:   15 LRGMTALVTGGTRGIGYAIVEELANFGAEVYTCSRSQNDLDECLEKWRRKGFKVSGPVCDVSSISQRQTLMESVTSSFNGKLNILINNAGTTIPKEATNFTAEDYSIIMGTNFEASYNLCQLAHPLLKASGNASIVFNSSAAGVIAVPLSSIYAASKGAIN---------QVTKSLACEWAKD-SIRVNAVAP 197          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii GN=DHRS4 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.195e-11
Identity = 56/198 (28.28%), Postives = 94/198 (47.47%), Query Frame = 2
Query:   53 KADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILV-NAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            + D L  KVAL+T    GIGF I+ +  + GA V +  R++Q +D AV+ L+  G+   G    V + E  +++V +  +  G +DILV NAA   F  S  D++   +   +DI+      M    +  ++K            ++ +S+   ++ S               +T+ LA+E  A  +IRVN +APG I
Sbjct:    8 RRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEK-------RGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIEL-APRNIRVNCLAPGLI 197          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.195e-11
Identity = 56/198 (28.28%), Postives = 94/198 (47.47%), Query Frame = 2
Query:   53 KADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILV-NAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            + D L  KVAL+T    GIGF I+ +  + GA V +  R++Q +D AV+ L+  G+   G    V + E  +++V +  +  G +DILV NAA   F  S  D++   +   +DI+      M    +  ++K            ++ +S+   ++ S               +T+ LA+E  A  +IRVN +APG I
Sbjct:    8 RRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEK-------RGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIEL-APRNIRVNCLAPGLI 197          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: HSDL2_PONAB (Hydroxysteroid dehydrogenase-like protein 2 OS=Pongo abelii GN=HSDL2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 56/209 (26.79%), Postives = 86/209 (41.15%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQ-------VLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 670
            L G    ITG   GIG  I+ +  K GA++ I  +  Q        +  A   + ++G KA+    DVR ++     VE   + FG +DILVN A+   L +  D        +M++++ GT+      + YLKK            ILNIS  L+    W++ H              L +      +I VN + P     T  M+ L
Sbjct:    8 LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQINAAVEKAIKQFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKK-------SKVAHILNISPPLNLNPIWFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHTAAMDML 209          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: HDHA_ECOLI (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli (strain K12) GN=hdhA PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 54/193 (27.98%), Postives = 83/193 (43.01%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            L GK A+ITG G+GIG EI+  F   GASV +        +  V  ++ LG +A     D+  ++    + +      GK+DILVN A G       D+    FR   +++    F +       ++K            IL I++      +               + RN+A + G + +IRVNGIAPG I
Sbjct:    9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGG-PKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEK-------NGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLG-EKNIRVNGIAPGAI 192          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: HDHA_ECO57 (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli O157:H7 GN=hdhA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 54/193 (27.98%), Postives = 83/193 (43.01%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            L GK A+ITG G+GIG EI+  F   GASV +        +  V  ++ LG +A     D+  ++    + +      GK+DILVN A G       D+    FR   +++    F +       ++K            IL I++      +               + RN+A + G + +IRVNGIAPG I
Sbjct:    9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGG-PKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEK-------NGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLG-EKNIRVNGIAPGAI 192          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 54/194 (27.84%), Postives = 86/194 (44.33%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHF-GKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            LKG  AL+TGG  GIG+ I  +    GA V    R ++ LD  +   R  G+   G   D+  +    K++++    F GKL+ILVN A       A+D +   +  +M  +    + +   A   LK             ++ +S+   ++A                +T++LA EW  D +IRVN +APG I
Sbjct:   19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLK-------ASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKD-NIRVNSVAPGVI 204          
BLAST of FC930319 vs. ExPASy Swiss-Prot
Match: HSDL2_HUMAN (Hydroxysteroid dehydrogenase-like protein 2 OS=Homo sapiens GN=HSDL2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 56/209 (26.79%), Postives = 86/209 (41.15%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQ-------VLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 670
            L G    ITG   GIG  I+ +  K GA++ I  +  Q        +  A   + ++G KA+    DVR ++     VE   + FG +DILVN A+   L +  D        +M++++ GT+      + YLKK            ILNIS  L+    W++ H              L +      +I VN + P     T  M+ L
Sbjct:    8 LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKK-------SKVAHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHTAAMDML 209          
The following BLAST results are available for this feature:
BLAST of FC930319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
GRDH_ORYSJ5.362e-1229.25Glucose and ribitol dehydrogenase homolog OS=Oryza... [more]
FABG_THEMA7.003e-1228.713-oxoacyl-[acyl-carrier-protein] reductase OS=Ther... [more]
TRNH_DATST1.195e-1128.50Tropinone reductase homolog OS=Datura stramonium P... [more]
DHRS4_PONAB1.195e-1128.28Dehydrogenase/reductase SDR family member 4 OS=Pon... [more]
DHRS4_HUMAN1.195e-1128.28Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
HSDL2_PONAB1.560e-1126.79Hydroxysteroid dehydrogenase-like protein 2 OS=Pon... [more]
HDHA_ECOLI1.560e-1127.987-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]
HDHA_ECO571.560e-1127.987-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]
TRN1_DATST2.038e-1127.84Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
HSDL2_HUMAN2.038e-1126.79Hydroxysteroid dehydrogenase-like protein 2 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionC34006B10EF PostHarvC1 Citrus clementina cDNA clone C34006B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930319 ID=FC930319; Name=FC930319; organism=Citrus clementina; type=EST; length=670bp
GCAAAAGCGGTCAGATAAAGAAATAAGCAAAATGTCGTTGGAATCTCCGT
TCAAGGCCGATATATTGAAAGGCAAAGTCGCTTTGATCACAGGAGGTGGT
TCGGGAATTGGGTTTGAGATATCAACCCAATTCGGTAAACATGGAGCTTC
AGTTGCAATCATGGGACGTCGCAAGCAAGTCCTTGATGCTGCTGTTTCTG
CTCTTCGGTCTCTTGGAATCAAGGCTGTTGGCTTTGAAGGAGATGTTCGT
AGGCAGGAACATGCGAAAAAAGTTGTGGAATCAACTTTTGAGCATTTTGG
GAAGCTTGACATTCTTGTGAATGCTGCGGCCGGCAACTTTCTTGTATCAG
CTGAGGATTTGTCCCCTAATGGGTTTCGAACAGTTATGGATATTGATTCT
GTCGGCACATTCACAATGTGCCATGAAGCACTTAAATATCTTAAAAAGGG
TGGACCTGGGAGAAGCTCAGCTGGTGGTGGATCCATTTTGAACATTAGTG
CTACTTTACATTATACAGCTTCTTGGTACCAAATACATGTAGCTGCAGCC
AAGGCAGCTGTTGATGCCATTACCAGAAACTTGGCACTGGAATGGGGAGC
TGACTATGATATTCGAGTCAATGGAATTGCCCCAGGCCCCATCGGTGATA
CCCCGGGCATGAATAAACTT
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