FC930322

Overview
NameFC930322
Unique NameFC930322
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_BORT9 (Elongation factor Tu OS=Borrelia turicatae (strain 91E135) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 64/197 (32.49%), Postives = 101/197 (51.27%), Query Frame = 3
Query:   90 IMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF 680
            +  + K H+N+  IGHVD GK+T T  +      ++K             + ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D AVL++ + +G        + QT+EH LLA  +G+ ++I   NK+D   P+      + +  EV   ++K G+ P   P V  S F
Sbjct:    5 VFQRTKPHMNVGTIGHVDHGKTTLTAAISIYCSKVNK-------------DAKALKYEDI-DNAPEEKARGITINARHIEYETAGMHYAHVDCPGHADYIKNMITGAAQMDAAVLLVAADSGA-------EPQTKEHLLLAQRMGINKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGF-PGDTPIVKGSAF 175          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU3_STRCO (Elongation factor Tu-3 OS=Streptomyces coelicolor GN=tuf3 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 71/200 (35.50%), Postives = 100/200 (50.00%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISG---FEGD 689
            + K H+NI  +GHVD GK+T T         I K + ER      +    SF     +D+   E  RGITI+IA  ++ET   +   +D PGH D++KNM+TG +Q D A+L++ +  G          QT EH LLA  +GV  ++   NK DA   + +    D +  EV   L   GY  + VP V +SG    EGD
Sbjct:    8 RTKPHLNIGTMGHVDHGKTTLTA-------AITKVLAERGAGSTTQYV--SFDR---IDRAPEEAARGITINIAHVEYETDTRHYAHVDMPGHADYVKNMVTGAAQLDGAILVVSALDGIMP-------QTAEHVLLARQVGVDHIVVALNKADAGDEELT----DLVELEVRELLTAHGYGGDAVPVVRVSGLKALEGD 184          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_THEEB (Elongation factor Tu OS=Thermosynechococcus elongatus (strain BP-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 60/195 (30.77%), Postives = 98/195 (50.26%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFE 683
            + K H+N+  IGHVD GK+T T  +   L    K    ++++               +D    E+ RGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D       +   + +  E+   L +  +  ++VP +  SG +
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAAITMTLAAQGKAQARKYDE---------------IDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGAMP-------QTKEHILLARQVGVPSIVVFLNKVDMVD---DEELLELVELELRELLNEYEFPGDEVPIIRGSGLK 177          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_RICPA (Elongation factor Tu OS=Rickettsia parkeri GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 66/211 (31.28%), Postives = 100/211 (47.39%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTN 713
            + K H+NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKVDMVD---DSDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN 190          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_RICMO (Elongation factor Tu OS=Rickettsia montana GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 66/211 (31.28%), Postives = 100/211 (47.39%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTN 713
            + K H+NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITMVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKVDMVD---DSDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN 190          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_PICGU (Elongation factor Tu, mitochondrial OS=Pichia guilliermondii GN=TUF1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 61/189 (32.28%), Postives = 94/189 (49.74%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 665
            + K H+NI  IGHVD GK+T T  +                K  +E    +F     +D+   ER RGITI  A  +++T K +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV+ ++   NK+D           + +  E+   L + G++ +  P +
Sbjct:   32 RSKPHVNIGTIGHVDHGKTTLTAAIT---------------KVLSEKGGANFLDYGSIDRAPEERARGITISTAHVEYQTDKRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGQMP-------QTREHLLLARQVGVQHLVVFVNKVDTID---DPEMLELVEMEMRELLSQYGFDGDNTPVI 195          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_PELUB (Elongation factor Tu OS=Pelagibacter ubique GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 62/189 (32.80%), Postives = 94/189 (49.74%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 665
            + K H NI  IGHVD GK+T T  +   L  +       +++               +DK   E+ERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++++  G          QTREH LL   +G+  ++   NK+D    K      +E ++E+ +  K   Y  +K P V
Sbjct:    8 RNKPHCNIGTIGHVDHGKTTLTAAITITLAELGGGKAVAYDQ---------------IDKAPEEKERGITISTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMP-------QTREHILLGRQVGIPAIVVYLNKVDQVDDKDMIELVEEEIRELLTSYK---YPGDKTPIV 171          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_PELPD (Elongation factor Tu OS=Pelobacter propionicus (strain DSM 2379) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 62/189 (32.80%), Postives = 92/189 (48.68%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 665
            + K H+NI  IGHVD GK+T T  +   L G  +   + F++               +D    ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P V
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITKVLAGKGQAEFKAFDQ---------------IDNAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVYLNKADMVD---DEELLELVELEIRELLSSYDFPGDDIPIV 171          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_NOVAD (Elongation factor Tu OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 70/210 (33.33%), Postives = 100/210 (47.62%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEG--DNMIERSTN 713
            + K H NI  IGHVD GK+T T  +                K  AE     F     +DK   ERERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++++  G          QTREH LLA  +GV  ++   NK+D       +   + +  EV   L    +  + +P V    ++  EG  DN+ + S N
Sbjct:    8 RNKPHCNIGTIGHVDHGKTTLTAAIT---------------KVLAEQGGAEFTDYANIDKAPEERERGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMP-------QTREHILLARQVGVPALVVYMNKVDQVD---DEEILELVELEVRELLSSYDFPGDDIPIVKGSALAALEGRDDNIGKDSIN 192          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_MYCVP (Elongation factor Tu OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 71/201 (35.32%), Postives = 107/201 (53.23%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGD 689
            + K H+NI  IGHVD GK+T T         I K + +++     ++N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ E+ P V +S     EGD
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----DLNESRAFDQ---IDNAPEERQRGITINISHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVD---DEELIELVEMEVRELLAAQDFD-EEAPVVKVSALKALEGD 183          
The following BLAST results are available for this feature:
BLAST of FC930322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BORT99.862e-2132.49Elongation factor Tu OS=Borrelia turicatae (strain... [more]
EFTU3_STRCO9.862e-2135.50Elongation factor Tu-3 OS=Streptomyces coelicolor ... [more]
EFTU_THEEB1.288e-2030.77Elongation factor Tu OS=Thermosynechococcus elonga... [more]
EFTU_RICPA1.288e-2031.28Elongation factor Tu OS=Rickettsia parkeri GN=tuf ... [more]
EFTU_RICMO1.288e-2031.28Elongation factor Tu OS=Rickettsia montana GN=tuf ... [more]
EFTU_PICGU1.288e-2032.28Elongation factor Tu, mitochondrial OS=Pichia guil... [more]
EFTU_PELUB1.288e-2032.80Elongation factor Tu OS=Pelagibacter ubique GN=tuf... [more]
EFTU_PELPD1.288e-2032.80Elongation factor Tu OS=Pelobacter propionicus (st... [more]
EFTU_NOVAD1.288e-2033.33Elongation factor Tu OS=Novosphingobium aromaticiv... [more]
EFTU_MYCVP1.288e-2035.32Elongation factor Tu OS=Mycobacterium vanbaalenii ... [more]

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Properties
Property NameValue
Genbank descriptionC34006C01EF PostHarvC1 Citrus clementina cDNA clone C34006C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930322 ID=FC930322; Name=FC930322; organism=Citrus clementina; type=EST; length=741bp
GATTTTCGCTACACGCTCTCAGTTTCTGCAAGTCGGCGAGAGAGAAACCT
TTTAGCAAATTTCATATCAAGGTTTTATACTAGATTTGCATAATGGGTAA
GGAGAAGACTCACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAA
AGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAG
CGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTC
ATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTG
GTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTAC
TGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGAT
TACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCA
CCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCAT
GCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAA
CAAGATGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAA
TTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAG
AAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGA
GAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGC
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