FC930327

Overview
NameFC930327
Unique NameFC930327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_MACNE (Superoxide dismutase [Mn], mitochondrial OS=Macaca nemestrina GN=SOD2 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.196e-46
Identity = 100/191 (52.36%), Postives = 120/191 (62.83%), Query Frame = 2
Query:  122 RKAIGLGKSVGLGLRGL---QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            R   G G+ +   L  L   Q  +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYY
Sbjct:    4 RAVCGTGRQLAPALGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKYKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACLNQDPL-QGTTGLIPLLGIDVWEHAYY 190          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_CAVPO (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Cavia porcellus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.039e-46
Identity = 98/178 (55.06%), Postives = 119/178 (66.85%), Query Frame = 2
Query:  155 LGLRGL-QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LG+ G+ Q  +LPDLPYDY AL+P I+ EIMQLHH KHH AY+ N N A E+  +AL K D +  V LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +   +NQDPL      L+PLLGIDVWEHAYY
Sbjct:   17 LGILGVRQKHSLPDLPYDYGALQPHINAEIMQLHHSKHHAAYLNNLNIAEEKYQEALAKGDVTAQVALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAVSVGVQGSGWGWLGFNKERGCLQIAACSNQDPL-QGTTGLIPLLGIDVWEHAYY 190          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_MACMU (Superoxide dismutase [Mn], mitochondrial OS=Macaca mulatta GN=SOD2 PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.664e-46
Identity = 94/168 (55.95%), Postives = 112/168 (66.67%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYY
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYY 166          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_MACFU (Superoxide dismutase [Mn], mitochondrial OS=Macaca fuscata fuscata GN=SOD2 PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.664e-46
Identity = 94/168 (55.95%), Postives = 112/168 (66.67%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYY
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYY 166          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_CHLTR (Superoxide dismutase [Mn] OS=Chlamydia trachomatis GN=sodA PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.479e-46
Identity = 88/168 (52.38%), Postives = 116/168 (69.05%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYY 685
            LP LPYDY ALEP IS EIMQLHHQKHHQ Y+ N N+A++ L  A    D + ++ +  A++FNGG H+NHS+FW+ LAP  +GGG PP   L   I+  +GS +  ++      AA+QGSGW WL    + + L+V+TTANQDPL  +A T ++PLLG+DVWEHAYY
Sbjct:    8 LPALPYDYDALEPVISAEIMQLHHQKHHQGYINNLNEALKSLDVANATQDLARLIAINPALRFNGGSHINHSLFWEMLAPQGKGGGVPPRHELLKLIEKFWGSFDNFLKNFITSSAAVQGSGWGWLAFCPQKQELMVQTTANQDPL--EATTGMIPLLGVDVWEHAYY 173          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_PONPY (Superoxide dismutase [Mn], mitochondrial OS=Pongo pygmaeus GN=SOD2 PE=2 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 5.934e-46
Identity = 94/171 (54.97%), Postives = 112/171 (65.50%), Query Frame = 2
Query:  173 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            Q  +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYY
Sbjct:   24 QKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYY 190          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_HUMAN (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 5.934e-46
Identity = 94/171 (54.97%), Postives = 112/171 (65.50%), Query Frame = 2
Query:  173 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            Q  +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYY
Sbjct:   24 QKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYY 190          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_PANTR (Superoxide dismutase [Mn], mitochondrial OS=Pan troglodytes GN=SOD2 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.750e-46
Identity = 93/168 (55.36%), Postives = 111/168 (66.07%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYY
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYY 166          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_HYLLA (Superoxide dismutase [Mn], mitochondrial OS=Hylobates lar GN=SOD2 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.750e-46
Identity = 93/168 (55.36%), Postives = 111/168 (66.07%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYY
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTATSVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYY 166          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_CEBAP (Superoxide dismutase [Mn], mitochondrial OS=Cebus apella GN=SOD2 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.322e-45
Identity = 92/168 (54.76%), Postives = 111/168 (66.07%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   ++++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYY
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNDTEEKYKEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKERLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYY 166          
The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
SODM_MACNE1.196e-4652.36Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_CAVPO2.039e-4655.06Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_MACMU2.664e-4655.95Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_MACFU2.664e-4655.95Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_CHLTR3.479e-4652.38Superoxide dismutase [Mn] OS=Chlamydia trachomatis... [more]
SODM_PONPY5.934e-4654.97Superoxide dismutase [Mn], mitochondrial OS=Pongo ... [more]
SODM_HUMAN5.934e-4654.97Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
SODM_PANTR7.750e-4655.36Superoxide dismutase [Mn], mitochondrial OS=Pan tr... [more]
SODM_HYLLA7.750e-4655.36Superoxide dismutase [Mn], mitochondrial OS=Hyloba... [more]
SODM_CEBAP1.322e-4554.76Superoxide dismutase [Mn], mitochondrial OS=Cebus ... [more]

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Properties
Property NameValue
Genbank descriptionC34006C06EF PostHarvC1 Citrus clementina cDNA clone C34006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bp
AGGGAAATCAACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGT
CTCGGTTGAATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATG
GCTCTCCGTTCGCTTGCCATCAGAAAAGCTATAGGCTTGGGTAAATCCGT
AGGATTAGGGCTGCGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGT
ACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTT
CATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGT
CGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACCGTCGTCC
AGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCA
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACC
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