FC930327

Overview
NameFC930327
Unique NameFC930327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.826e-33
Identity = 73/177 (41.24%), Postives = 106/177 (59.89%), Query Frame = 2
Query:  176 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV-------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            T  LP LPY Y ALEP    E M++H+ KHH  YVT  N+AV    +  +K     V        +++GA++ +GGGH NH++FW +L+P    GG  P  +L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  +++  T  P+LG+DVWEHAYY
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMEIHYTKHHNIYVTKLNEAVSGHAELASKPGEELVANLDSVPEEIRGAVRNHGGGHANHTLFWSSLSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNN--GKLEIVSTANQDSPLSEGKT--PVLGLDVWEHAYY 171          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM1_BACAN (Superoxide dismutase [Mn] 1 OS=Bacillus anthracis GN=sodA1 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.283e-32
Identity = 77/178 (43.26%), Postives = 104/178 (58.43%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP+LPY Y ALEP    E M +HH KHH  Y+TN N           K+VE+L   LN+V  +    ++ A++ NGGGH NH+ FW  L+P   GGG+P    L  AI+  FGS +A  ++ +  GA   GSGW WL ++     L V +T NQD  +T+  T  P++G+DVWEHAYY
Sbjct:    6 LPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEA----IRTAVRNNGGGHANHTFFWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNN--GELEVTSTPNQDSPLTEGKT--PVIGLDVWEHAYY 172          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_MYCTU (Superoxide dismutase [Fe] OS=Mycobacterium tuberculosis GN=sodB PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.676e-32
Identity = 76/169 (44.97%), Postives = 100/169 (59.17%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYY 685
            TLPDL +DY ALEP ISG+I +LHH KHH  YV   N AV +L +A  K D S ++  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AI   FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  +VPLL +D+WEHA+Y
Sbjct:    5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHAFY 167          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_MYCBO (Superoxide dismutase [Fe] OS=Mycobacterium bovis GN=sodB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.676e-32
Identity = 76/169 (44.97%), Postives = 100/169 (59.17%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYY 685
            TLPDL +DY ALEP ISG+I +LHH KHH  YV   N AV +L +A  K D S ++  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AI   FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  +VPLL +D+WEHA+Y
Sbjct:    5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHAFY 167          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_PSEPU (Superoxide dismutase [Mn] OS=Pseudomonas putida GN=sodA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.859e-32
Identity = 78/178 (43.82%), Postives = 102/178 (57.30%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            TLP LPY Y ALEP I  + M++HH KHHQ YV   N A          VE+L  A+ ++  S    L+GA+  +GGGH NHS+FW  ++P  +GGGE PH  L  AI +  G  +A  +  +       GSGW WL + T  K LVVE++ NQD  +    T  P+ G+DVWEHAYY
Sbjct:    4 TLPALPYAYDALEPHIDAQTMEIHHTKHHQTYVNGLNAAIEGTEWAEWPVEKLVGAVKQLPES----LRGAVTNHGGGHANHSLFWTVMSP--QGGGE-PHGQLAQAIASQLGGFDAFKEAFTKAALTRFGSGWAWLSV-TPQKTLVVESSGNQDSPLMFGNT--PIFGLDVWEHAYY 171          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 8.318e-32
Identity = 82/183 (44.81%), Postives = 104/183 (56.83%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVH-EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYY 685
            TLP LPY Y ALEP I    M++HH KHHQ YV N NKA          VEQL Q L++V        +GA++ N GGH NHS+FW+ +     + G   P   L  AI++ FGS +A  QK         GSGW WL +  +  +L V +TANQD PL+ +A   V   P+LG+DVWEHAYY
Sbjct:    4 TLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADK----KGALRNNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVV--KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYY 180          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRR6 (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=sodA PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.419e-31
Identity = 76/175 (43.43%), Postives = 99/175 (56.57%), Query Frame = 2
Query:  179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            + LP+LPY Y ALEP I  E M LHH KHHQ YV N N A+E      +  +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+DVWEHAYY
Sbjct:    3 IILPELPYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGLDVWEHAYY 170          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRPN (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae GN=sodA PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.419e-31
Identity = 76/175 (43.43%), Postives = 99/175 (56.57%), Query Frame = 2
Query:  179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            + LP+LPY Y ALEP I  E M LHH KHHQ YV N N A+E      +  +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+DVWEHAYY
Sbjct:    3 IILPELPYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGLDVWEHAYY 170          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_LISMO (Superoxide dismutase [Mn] OS=Listeria monocytogenes GN=sodA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.419e-31
Identity = 74/177 (41.81%), Postives = 103/177 (58.19%), Query Frame = 2
Query:  176 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            T  LP LPY Y ALEP    E M++H+ KHH  YVT  N+AV    +  +K     V  L       +GA++ +GGGH NH++FW  L+P    GG  P  +L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  ++   T  P+LG+DVWEHAYY
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMEIHYTKHHNTYVTKLNEAVAGHPELASKSAEELVTNLDSVPEDIRGAVRNHGGGHANHTLFWSILSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVND--GKLEIVSTANQDSPLSDGKT--PVLGLDVWEHAYY 171          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_LISIN (Superoxide dismutase [Mn] OS=Listeria innocua GN=sodA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.419e-31
Identity = 75/177 (42.37%), Postives = 103/177 (58.19%), Query Frame = 2
Query:  176 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV-------EQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            T  LP LPY Y ALEP    E M+LH+ KHH  YVT  N+AV       E+  + L     S    ++GA++ +GGGH NH++FW  L+P    GG  P   L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  ++   T  P+LG+DVWEHAYY
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMELHYTKHHNTYVTKLNEAVSGHPELAEKPVEELVANLDSVPEDIRGAVRNHGGGHANHTLFWSILSP---NGGGAPTGDLKSAIESEFGTFDDFKEKFNAAAAARFGSGWAWLVVNN--GKLEIVSTANQDSPLSDGKT--PVLGLDVWEHAYY 171          
The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
SODM_LISIV9.826e-3341.24Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]
SODM1_BACAN1.283e-3243.26Superoxide dismutase [Mn] 1 OS=Bacillus anthracis ... [more]
SODF_MYCTU1.676e-3244.97Superoxide dismutase [Fe] OS=Mycobacterium tubercu... [more]
SODF_MYCBO1.676e-3244.97Superoxide dismutase [Fe] OS=Mycobacterium bovis G... [more]
SODM_PSEPU2.859e-3243.82Superoxide dismutase [Mn] OS=Pseudomonas putida GN... [more]
SODM_DEIRA8.318e-3244.81Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODM_STRR61.419e-3143.43Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_STRPN1.419e-3143.43Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_LISMO1.419e-3141.81Superoxide dismutase [Mn] OS=Listeria monocytogene... [more]
SODM_LISIN1.419e-3142.37Superoxide dismutase [Mn] OS=Listeria innocua GN=s... [more]

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Properties
Property NameValue
Genbank descriptionC34006C06EF PostHarvC1 Citrus clementina cDNA clone C34006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bp
AGGGAAATCAACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGT
CTCGGTTGAATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATG
GCTCTCCGTTCGCTTGCCATCAGAAAAGCTATAGGCTTGGGTAAATCCGT
AGGATTAGGGCTGCGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGT
ACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTT
CATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGT
CGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACCGTCGTCC
AGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCA
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACC
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