FC930328

Overview
NameFC930328
Unique NameFC930328
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930328 vs. ExPASy Swiss-Prot
Match: MDMC_STRMY (O-methyltransferase mdmC OS=Streptomyces mycarofaciens GN=mdmC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.654e-19
Identity = 56/129 (43.41%), Postives = 77/129 (59.69%), Query Frame = 1
Query:  283 SVYPREPQCLKEIRELTDKHPWS-AMMTAPDEAQFLSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDA 666
            SV  RE   L+E+ ++T + P   AM   P+EAQFL +L++L+ A+  +EIG FTGYS L  A A+P  G+I+  DI+ +    G P  Q+AGV   ID R G A   L +L ++    G FD VFVDA
Sbjct:   17 SVALREDGLLRELHDMTAQLPGGRAMQIMPEEAQFLGLLIRLVGARRVLEIGTFTGYSTLCMARALPAGGRIVTCDISDKWPGIGAPFWQRAGVDGLIDLRIGDAARTLAEL-RERDGDGAFDLVFVDA 144          
BLAST of FC930328 vs. ExPASy Swiss-Prot
Match: CAMT2_DICDI (Probable caffeoyl-CoA O-methyltransferase 2 OS=Dictyostelium discoideum GN=omt6 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18
Identity = 47/123 (38.21%), Postives = 79/123 (64.23%), Query Frame = 1
Query:  298 EPQCLKEIRELTDKHPWSAMMTAPDEAQFLSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDA 666
            + + ++  +E  ++H    M+T  ++  F  +L++++NAK T++IGVFTG S L  ALA+ D+G+++A D++ E+ +  L    KAGV HKI+ +  PA   L +LI D+    T+DFVF+DA
Sbjct:   35 QKELIQFTKENIERH---IMLTQAEQCSFFKLLIQVLNAKKTIDIGVFTGLSSLTAALAMGDEGRVVACDVSTEYTQHALKFWAKAGVDHKINLKIQPASKTLQELI-DQGEENTYDFVFIDA 153          
BLAST of FC930328 vs. ExPASy Swiss-Prot
Match: CAMT1_DICDI (Probable caffeoyl-CoA O-methyltransferase 1 OS=Dictyostelium discoideum GN=omt5 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.961e-18
Identity = 46/123 (37.40%), Postives = 79/123 (64.23%), Query Frame = 1
Query:  298 EPQCLKEIRELTDKHPWSAMMTAPDEAQFLSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDA 666
            + + ++  +E  ++H    M+T  ++  F  +L++++NAK T++IGVFTG S L  ALA+ D+G+++A D++ ++ +  L    KAGV HKI+ +  PA   L +LI D+    T+DFVF+DA
Sbjct:   34 QKELIQFTKENIERH---IMLTQAEQCSFFKLLIQVLNAKKTIDIGVFTGLSSLTAALAMGDEGRVVACDVSTDYTQHALKFWAKAGVDHKINLKIQPASKTLQELI-DQGEENTYDFVFIDA 152          
The following BLAST results are available for this feature:
BLAST of FC930328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
MDMC_STRMY7.654e-1943.41O-methyltransferase mdmC OS=Streptomyces mycarofac... [more]
CAMT2_DICDI2.227e-1838.21Probable caffeoyl-CoA O-methyltransferase 2 OS=Dic... [more]
CAMT1_DICDI4.961e-1837.40Probable caffeoyl-CoA O-methyltransferase 1 OS=Dic... [more]

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Properties
Property NameValue
Genbank descriptionC34006C07EF PostHarvC1 Citrus clementina cDNA clone C34006C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930328 ID=FC930328; Name=FC930328; organism=Citrus clementina; type=EST; length=666bp
GATGGTATTCTGTAAGTAATGCCTGCGAATCGGGAAGGTCAGGAGGAAAA
CAAGGATCGTTACTACAAAACTCTACATGGGAACAAGACCCTTTTACAGA
GTGAAAAACTTTATGAGGTGTATATATATACATACAAATTAAAACTACAC
ACTCTTTTTAATTTTCTGTTTCTTTAATTTAACTAAAATGTAGAATGGAA
TGTCTCAATTATGCCGGCTATTATAATTTCTCTATCTTGATTTCTTCTTA
TTAATTATATCTTGCAGTATATACTTGAAACCAGTGTATATCCAAGAGAA
CCACAATGCTTGAAGGAGATCCGCGAGTTGACGGACAAGCATCCATGGAG
CGCCATGATGACTGCACCTGATGAAGCACAATTTTTGAGCATGCTACTCA
AGCTTATCAATGCCAAGAATACCATGGAAATTGGCGTTTTCACTGGTTAC
TCTCTCCTAGCCACTGCCCTCGCCATTCCCGACGATGGCAAGATACTGGC
CCTGGACATCACCAAGGAACACTACGAGAAGGGTCTCCCTATAATTCAAA
AAGCTGGTGTTGCCCACAAGATTGATTTCAGAGAAGGCCCTGCTCTTCCT
CTTCTTGATCAATTGATCCAAGACGAAAAATATCATGGGACATTCGACTT
CGTCTTTGTTGATGCT
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