FC930332

Overview
NameFC930332
Unique NameFC930332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930332 vs. ExPASy Swiss-Prot
Match: PAP3_ARATH (Probable plastid-lipid-associated protein 3, chloroplastic OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.414e-29
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  361 LKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSSLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSP 711
            LK+ L DS YGT+ G  A SE RAE++EL+ QLEA NPTPAP E   LL+  W+L+YT+FS L PLL+ G+ PL +V+ ISQ+ID+ N  + NS   + P A  S S  A FEVRSP
Sbjct:  153 LKRCLADSVYGTELGFKAGSEVRAEVLELVNQLEALNPTPAPLENPELLDGNWVLLYTAFSELIPLLAAGSTPLLKVKSISQSIDTNNLIIDNSTTLSSPFADFSFSATASFEVRSP 269          
BLAST of FC930332 vs. ExPASy Swiss-Prot
Match: PAP3_ORYSJ (Probable plastid-lipid-associated protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP3 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.375e-29
Identity = 64/133 (48.12%), Postives = 87/133 (65.41%), Query Frame = 1
Query:  334 PKEVTEIDN-------LKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSSLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSP 711
            P  V E DN       LK+ LVD+ YG+D G  A+SE R E++EL+TQLEA NPTP P +A  LL   WIL+YT++S L P+L+ G  PL +V+EISQ ID+ + T+ N+   + P A+ S S  A F+V+SP
Sbjct:  133 PPPVPEEDNEEERREELKRCLVDTVYGSDLGFRASSEVRGEVLELVTQLEATNPTPEPVQATHLLAGNWILIYTAYSELLPILAVGAAPLFKVDEISQEIDTNSMTIVNASTISSPFASFSFSATASFDVQSP 265          
BLAST of FC930332 vs. ExPASy Swiss-Prot
Match: PAP3_BRACM (Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris GN=PAP3 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27
Identity = 58/117 (49.57%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  361 LKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSSLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSP 711
            LK+ L D+ YGT+ G  A SE RAE++E++ QLEA NPT AP E   LL+  W+L+YT+FS L PLL+ G+ PL +V+ ISQ+ID+++ ++ NS   + P A  S S  A FEVR+P
Sbjct:  137 LKRCLADTVYGTELGFRAGSEVRAEVLEIVNQLEALNPTQAPVENPELLDGNWVLLYTAFSELLPLLAAGSTPLLKVKSISQSIDTKSLSIDNSTTLSSPFADFSFSATASFEVRTP 253          
The following BLAST results are available for this feature:
BLAST of FC930332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PAP3_ARATH1.414e-2953.85Probable plastid-lipid-associated protein 3, chlor... [more]
PAP3_ORYSJ5.375e-2948.12Probable plastid-lipid-associated protein 3, chlor... [more]
PAP3_BRACM1.324e-2749.57Plastid lipid-associated protein 3, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC34006D02EF PostHarvC1 Citrus clementina cDNA clone C34006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930332 ID=FC930332; Name=FC930332; organism=Citrus clementina; type=EST; length=713bp
GGAGATTTTCTAGTTCCTCTGCTGGCGAAAACTGTGTGTTGTAACTGTGT
GTTTTTGGAAAAGCTAATGGCTTCAATATCTCAAACCAACCAGTTCCCGT
GCAAGACTCTTTCACAAAACCCACCACACAATCAGTTCACCTCGAAGCCT
TCAATTCTTCCTTTGAACTCGGTTCGAATTTCACGGAGTCTCGCCAAGAA
ATCATTTCTTTCTATCCAAGGATTCACTCGGGCCAGGCCGCTGGTTCTAA
CTCGGGCTGCCGATGATGATGAGTGGGGCCCGGAGAAGGAGAAGGAGGGC
GGTGGCGCTCTGGCGGTGGCAGAGGAGGAGAGCCCAAAAGAAGTTACAGA
GATTGATAATTTGAAGAAAGCGCTTGTGGATTCGTTTTATGGGACCGATC
GTGGATTGAATGCCACAAGTGAGACGAGGGCTGAGATCGTTGAGCTTATT
ACGCAGCTTGAGGCTAAGAATCCAACCCCAGCTCCCACCGAGGCCTTAAC
TCTGCTAAATGCCAAATGGATTCTTGTGTACACATCTTTTTCAAGTTTGT
TTCCGTTGTTGTCAAGGGGAACATTGCCATTGGCGAGGGTGGAGGAGATA
TCTCAGACAATTGACTCAGAGAACTTCACGGTCCAGAACTCCATCCAGTT
TGCTGGGCCATTGGCTACAACTTCCATTAGTACCAATGCCAAGTTTGAAG
TGCGGAGCCCCAG
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