FC930333

Overview
NameFC930333
Unique NameFC930333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930333 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.921e-16
Identity = 61/143 (42.66%), Postives = 79/143 (55.24%), Query Frame = 2
Query:   26 EELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDTFFHALE--CEPTLQIGYQPAD-PISVVTAGPSLNNYMQGWLP 424
            +ELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++             L E  Q++       A   GY       ++   P  G+ FFH+LE   EPTLQIG+ P     S VTA      +M  WLP
Sbjct:  125 KELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRK-------------LEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTPEQMNNSCVTA------FMPTWLP 248          
BLAST of FC930333 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.019e-11
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = 2
Query:   29 ELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQP--QGDTFFHALECEPTLQI----GYQPADPISVVTAGPSLNNYMQGWL 421
            ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L+++   L  +D A  Q   G      Q     +  G     + P  Q   FF  L+    LQ+     + PA+  +  T   ++N +  GW+
Sbjct:  124 ELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRK---LEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANATNSATTSQNVNGFFPGWM 257          
BLAST of FC930333 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 2
Query:   26 EELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGY------QPADPISVVTAGPSLNNYMQGW 418
            +EL+ LE+QL+ SL Q R  +TQ M++ + +L+ KE+ L E NK LK +      +      + + +   T+         G  +  AQP  D     ++CEPTLQIGY      + A+P S    G   NN++ GW
Sbjct:  123 KELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSNCRSAIQDSWVHGTVV-------SGGRVLNAQPPPD-----IDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGW 247          
The following BLAST results are available for this feature:
BLAST of FC930333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MADS8_ORYSJ7.921e-1642.66MADS-box transcription factor 8 OS=Oryza sativa su... [more]
AGL3_ARATH2.019e-1133.58Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MAD17_ORYSJ4.498e-1132.85MADS-box transcription factor 17 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34006D03EF PostHarvC1 Citrus clementina cDNA clone C34006D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930333 ID=FC930333; Name=FC930333; organism=Citrus clementina; type=EST; length=669bp
GAAGAAAGAAAGGAGAAGAAACTGGGAAGAGCTTGAGTCACTTGAAAGGC
AGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACATG
CTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGC
AAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGATTTTG
CTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGAAT
CCCAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTCAGGG
CGATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATTGGAT
ACCAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTCTGAAT
AATTACATGCAAGGATGGCTACCATGCTAAGAGAGCGGCGGGCATTACCA
GTCAATGTATTGCAGTTGATCCATAAGAATCAGCAACTTTGTATCCCTTT
GTAAGCAACCCTATTCAGTGACTAGGAACACGCAATCATAAGGTTTTATT
ATAATAACTCTACAGTGATCCTGCACTTTAGGGAAACTGATGACGATATA
TAGCTATGTTGTGTGTGAGTGTATTTTCAATCACCGCGCTTATCTTTATT
TAACAGGCCTTGTTTGAGA
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