FC930334

Overview
NameFC930334
Unique NameFC930334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930334 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 3
Query:  462 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 569
            RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T
Sbjct:   88 RKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFET 123          
BLAST of FC930334 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 3
Query:  441 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 569
            +KS  R+R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF+T
Sbjct:   61 EKSNSRQRN--YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDT 101          
BLAST of FC930334 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  399 KSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 569
            KS G    + V      T RK+   +RG+RQRPWG+WAAEIRDPT+G RVWLGT++T
Sbjct:   76 KSIGDRKRRSVSPDSDVTRRKK---FRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDT 129          
BLAST of FC930334 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 3
Query:  462 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 569
            R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T
Sbjct:   86 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 121          
BLAST of FC930334 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 3
Query:  396 RKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 569
            R     + V  V  A  +T  ++K  +RG+RQRPWGKWAAEIRDP K VR+WLGT+NT
Sbjct:   98 RAVKSESTVSPVVSATTTTTGEKK--FRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNT 153          
BLAST of FC930334 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.195e-11
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 3
Query:  411 STAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFN 566
            +TA    E +  S ++ R+ +YRG+RQRPWGKWAAEIRDP K  RVWLGTF+
Sbjct:  165 TTATASSETSSFSGDQPRR-RYRGVRQRPWGKWAAEIRDPFKAARVWLGTFD 215          
The following BLAST results are available for this feature:
BLAST of FC930334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
EF115_ARATH8.015e-1280.56Ethylene-responsive transcription factor ERF115 OS... [more]
EF112_ARATH8.015e-1272.09Ethylene-responsive transcription factor ERF112 OS... [more]
PTI6_SOLLC1.786e-1156.14Pathogenesis-related genes transcriptional activat... [more]
EF114_ARATH1.786e-1177.78Ethylene-responsive transcription factor ERF114 OS... [more]
CRF2_ARATH3.978e-1155.17Ethylene-responsive transcription factor CRF2 OS=A... [more]
ABR1_ARATH5.195e-1159.62Ethylene-responsive transcription factor ABR1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC34006D04EF PostHarvC1 Citrus clementina cDNA clone C34006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930334 ID=FC930334; Name=FC930334; organism=Citrus clementina; type=EST; length=626bp
CATTCACTAGACATCCGAAGAATCCAAAACTCTCTCAAGCCAACAAAAGC
AAATTTTACATTTAACCCATTCTCTCCTAAAAATCTTTTCTCTTTAGTGC
CTGAACAAACCAGAAGAAACGAGAAACCTTAACCATGTGTGGAGGTGCTA
TCATTTCGGGCTACATCCCGCCCACCGTGCCGGGCCGGCCAAAGAAGCTG
ACGGCGGAGTATCTCTGGCCGGAGCTGAAGAGGTCATCCAACAAGAAGTA
CTCAAAGCCGATCGTCGACGATGACTTCGAGGCTGATTTCCAAGGATTCA
AGGACGATGAAGAAGAGTCTGACGTTGATGGTGACGTGGACGTTGATGCC
GACTTGATGATGGCTGATATTAAGCCTTTCACTTTCTCAGCTGGTCGCAA
GTCTCATGGATCTACAGCCGTGAAGCACGTTGAACAAGCTAAAAAATCCA
CAGAAAGAAAGAGGAAGAATCAATATAGGGGAATTAGGCAGCGTCCATGG
GGAAAATGGGCTGCTGAGATCCGTGACCCCACAAAAGGGGTTCGTGTCTG
GCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTAGGGCTTATGATGCCN
AGGCACGGAGGATCCGTGGGAAGAAA
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