FC930335

Overview
NameFC930335
Unique NameFC930335
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM_VICFA (S-adenosylmethionine decarboxylase proenzyme OS=Vicia faba GN=SAMDC PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.441e-21
Identity = 50/66 (75.76%), Postives = 59/66 (89.39%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            + VSAIGF G+EKRLE+SF +PG+F+DP GRGLRSL+K QLDEIL PAECTIVSSL+NE +DSYVL
Sbjct:    1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANEDVDSYVL 66          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM_PEA (S-adenosylmethionine decarboxylase proenzyme OS=Pisum sativum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.441e-21
Identity = 50/66 (75.76%), Postives = 59/66 (89.39%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            + VSAIGF G+EKRLE+SF +PG+F+DP GRGLRSL+K QLDEIL PAECTIVSSL+NE +DSYVL
Sbjct:    1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANEDVDSYVL 66          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM2_ARATH (S-adenosylmethionine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.882e-21
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            + +SAIGF GYEKRLEV+FFEPG+F D  G+GLR+L+K Q+DEIL+PAECTIVSSLSN+ LDSYVL
Sbjct:    1 MAMSAIGFEGYEKRLEVTFFEPGLFLDTQGKGLRALAKSQIDEILQPAECTIVSSLSNDQLDSYVL 66          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM2_DIACA (S-adenosylmethionine decarboxylase proenzyme 2 OS=Dianthus caryophyllus GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.458e-21
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            + +SAIGF G+EKRLE+SFFEPG+F DP G+GLR+LSK  LDEIL PAECTIV SL+NE +DSYVL
Sbjct:   16 MTISAIGFEGFEKRLEISFFEPGIFVDPEGKGLRALSKAHLDEILGPAECTIVDSLANESVDSYVL 81          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM2_BRAJU (S-adenosylmethionine decarboxylase proenzyme 2 OS=Brassica juncea GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            + VSAIGF GYEKRLEVSFFEP +F D  G+GLR+L K Q+DEIL PAECTIVSSLSN+ LDSYVL
Sbjct:    1 MSVSAIGFEGYEKRLEVSFFEPSLFVDTHGKGLRALPKSQIDEILAPAECTIVSSLSNDELDSYVL 66          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM_SPIOL (S-adenosylmethionine decarboxylase proenzyme OS=Spinacia oleracea GN=SAMDC PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            + +SAIGF G+EKRLE++FFEP +F DP G+GLR+L K QLDEIL PAECTIV SL+NE +DSYVL
Sbjct:    1 MAISAIGFEGFEKRLEITFFEPSIFVDPEGKGLRALCKAQLDEILGPAECTIVDSLANESVDSYVL 66          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM1_ARATH (S-adenosylmethionine decarboxylase proenzyme 1 OS=Arabidopsis thaliana GN=SAMDC1 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            + +SAIGF GYEKRLEV+FFEP +F D  G GLR+L+K QLDEIL PA CTIVSSLSN+ LDSYVL
Sbjct:    1 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQLDSYVL 66          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM_HELAN (S-adenosylmethionine decarboxylase proenzyme OS=Helianthus annuus GN=SAMDC PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 3
Query:  531 SAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            SAIGF G+EKRLE+SFF PG   DP  RGLRSL+K+QLD+ L PAECTIVSSLSN+ LDSYVL
Sbjct:    3 SAIGFEGFEKRLEISFFNPGPSVDPVARGLRSLTKNQLDKFLAPAECTIVSSLSNDLLDSYVL 65          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM1_BRAJU (S-adenosylmethionine decarboxylase proenzyme 1 OS=Brassica juncea GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            + +SAIGF G  +RLEVSFFEP +F D  G+GLR+LSK Q+DEIL PAECTIVSSLSN+ LDSYVL
Sbjct:    1 MSLSAIGFEGLRERLEVSFFEPSLFLDTHGKGLRALSKSQIDEILAPAECTIVSSLSNDELDSYVL 66          
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM3_BRAJU (S-adenosylmethionine decarboxylase proenzyme 3 OS=Brassica juncea GN=SAMDC3 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 47/66 (71.21%), Postives = 54/66 (81.82%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            + +SAIGF GYEKRLEVSFFEP  F D  G GLR+L++ QLDEIL PA C IVSSLSN++LDSYVL
Sbjct:    1 MALSAIGFEGYEKRLEVSFFEPSFFQDSKGLGLRALTRSQLDEILTPAACEIVSSLSNDHLDSYVL 66          
The following BLAST results are available for this feature:
BLAST of FC930335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
DCAM_VICFA1.441e-2175.76S-adenosylmethionine decarboxylase proenzyme OS=Vi... [more]
DCAM_PEA1.441e-2175.76S-adenosylmethionine decarboxylase proenzyme OS=Pi... [more]
DCAM2_ARATH1.882e-2174.24S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_DIACA2.458e-2172.73S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_BRAJU5.475e-2175.76S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM_SPIOL2.717e-2069.70S-adenosylmethionine decarboxylase proenzyme OS=Sp... [more]
DCAM1_ARATH7.906e-2072.73S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM_HELAN2.300e-1974.60S-adenosylmethionine decarboxylase proenzyme OS=He... [more]
DCAM1_BRAJU3.924e-1971.21S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM3_BRAJU5.125e-1971.21S-adenosylmethionine decarboxylase proenzyme 3 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34006D07EF PostHarvC1 Citrus clementina cDNA clone C34006D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930335 ID=FC930335; Name=FC930335; organism=Citrus clementina; type=EST; length=719bp
GAAAAACGAAACGGACGGAAGGAAATCGAAATTCGTTTTGTGAAACAGAG
TTAAAAATCAACCCTTCTTTAATCCTCAAGGAATTTTATTATTTTCTTGG
TCTCTGAATCGAGGGTTTTGCTTCTTGGTTTAGTGGGTTTGTTTTCGTTA
TATTATCTGAGAAAGGCTGAATGATCTAATGGAGTCAAAAGGTGGTAAGA
AGAAGTCTAGCAGTAGTTCCTTATTCTACGAAGCTCCTCTTGGTTACAGC
ATTGAAGACGTTCGACCTCACGGTGGCATAAAGAAGTTCAGATCAGCTGC
TTACTCAAACTGCGTCCGCAAACCATCCTGAGATCGTCCAATTTGTCCCA
TACCCCCCCAAAAAAAAGCTCACTACTACTGCAATTTTAATTTTTTTTAG
TTTTAGCCGTCTTAATACTGCAATTTACTTGGCCTATTTCTTTTTCGACT
TCCCTCGTTCTCTCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCATTTGT
TTTCTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGGAGG
TTATGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTG
ATCCTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACATCAATTGGATGAA
ATACTGAAACCTGCGGAATGCACAATTGTTTCTTCGTTGTCAAATGAATA
TCTTGATTCATATGTCCTC
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